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Summary Expression Phenotypes Gene Literature (23) GO Terms (41) Nucleotides (170) Proteins (39) Interactants (375) Wiki
XB-GENEPAGE-5727115

Show:     All X. tropicalis X. laevis

Nucleotide sequences for sdc4 - All

RefSeq mRNAs(3)
Models - Gene (17)
Models - mRNA (21)
mRNAs (9)
ESTs (99)

RefSeq mRNAs (3)

Accession Version Protein Name Length Protein Species
NM_001126539 NM_001126539.1 syndecan 4 precursor 996 bp NP_001120011 X. tropicalis
NM_001095708 NM_001095708.1 syndecan 4-B precursor 618 bp NP_001089177 X. laevis.L
NM_001095707 NM_001095707.1 syndecan 4-A precursor 582 bp NP_001089176 X. laevis.S

Models - Gene (17)

Source Version Model Species
NCBI 10.1 XBXL10_1g42315 X. laevis.S
NCBI 10.1 XBXL10_1g39081 X. laevis.L
NCBI 10.0 XBXT10g004658 X. tropicalis
ENSEMBL 10.0 sdc4 X. tropicalis
Xenbase 9.2 gene16414 X. laevis.L
Xenbase 9.2 gene49668 X. laevis.S
Xenbase 9.1 gene3094 X. tropicalis
ENSEMBL 9.1 sdc4 X. tropicalis
JGI 7.2 Xelaev16071930m.g X. laevis.L
JGI 7.2 Xelaev16009210m.g X. laevis.S
JGI 7.1 Xetro.J00727 X. tropicalis
JGI 6.0 XeXenL6RMv10034643m.g X. laevis.S
JGI 6.0 XeXenL6RMv10035600m.g X. laevis.L
ENSEMBL 4.1 ENSXETG00000022838 X. tropicalis
JGI 4.1 estExt_FilteredModels1.C_3340036 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_334000052 X. tropicalis
JGI 4.1 fgenesh1_Sanger_cdna.C_scaffold_334000011 X. tropicalis

mRNAs based on gene models(21)

Source Version Model Species
NCBI 10.1 XBmRNA73719 X. laevis.L
NCBI 10.1 XBmRNA79543 X. laevis.S
NCBI 10.0 mRNA023161 X. tropicalis
ENSEMBL 10.0 ENSXETT00000049396 X. tropicalis
ENSEMBL 10.0 ENSXETT00000117065 X. tropicalis
Xenbase 9.2 rna95748 X. laevis.S
Xenbase 9.2 rna47938 X. laevis.L
Xenbase 9.1 rna10143 X. tropicalis
ENSEMBL 9.1 ENSXETT00000049396 X. tropicalis
JGI 7.2 Xelaev16071930m X. laevis.L
JGI 7.2 Xelaev16009210m X. laevis.S
JGI 7.1 Xetro.J00727.1 X. tropicalis
JGI 6.0 XeXenL6RMv10034643m X. laevis.S
JGI 6.0 XeXenL6RMv10035600m X. laevis.L
JGI 4.1 fgenesh1_pg.C_scaffold_334000052 X. tropicalis
JGI 4.1 estExt_FilteredModels1.C_3340036 X. tropicalis
ENSEMBL 4.1 ENSXETT00000026665 X. tropicalis
ENSEMBL 4.1 ENSXETT00000057074 X. tropicalis
ENSEMBL 4.1 ENSXETT00000057072 X. tropicalis
ENSEMBL 4.1 ENSXETT00000049396 X. tropicalis
JGI 4.1 fgenesh1_Sanger_cdna.C_scaffold_334000011 X. tropicalis

mRNAs from cDNA libraries (9)

Clone Accession Species Library Anatomy Stage
IMAGE:7820515 BC158308 X. tropicalis
TEgg047k08 CR761083 X. tropicalis
NM_001126539 X. tropicalis
DQ116029 X. laevis.L
NM_001095708 X. laevis.L
IMAGE:4965024 BC131894 X. laevis.S
IMAGE:5542553 BC160673 X. laevis.S NICHD_XGC_Emb4 whole organism NF stage 31 to NF stage 32
DQ116028 X. laevis.S
NM_001095707 X. laevis.S

ESTs (99)

Clone Accession 5'/3' Species Library Anatomy Stage
IMAGE:8906589 EL799422 5' X. tropicalis NICHD_XGC_tropTail_m tail NF stage 55 to NF stage 66
IMAGE:7578943 CX417358 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:8864385 EL701044 5' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
IMAGE:7578027 CX423804 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7093484 CK655628 5' X. tropicalis XtSt10-30 whole organism NF stage 10 to NF stage 29 and 30
IMAGE:7576515 CX431658 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7029916 CF786473 5' X. tropicalis XtSt10-30 whole organism NF stage 10 to NF stage 29 and 30
TNeu090m03 AL804495 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu142g06 AL795700 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu080a08 AL776208 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TGas116b23 AL957256 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas104f20 AL961342 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
IMAGE:8914708 EL838134 5' X. tropicalis NICHD_XGC_tropTe1 testis frog
IMAGE:7737525 DN025380 5' X. tropicalis NIH_XGC_tropLiv1 liver frog
TNeu021n23 AL636263 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu007g01 AL635276 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
IMAGE:7560188 CX516061 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7552851 CX495663 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7533144 CX434470 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
TGas104f20 BX754204 3' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas116b23 BX756708 3' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
IMAGE:7578943 CX417357 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7578027 CX423803 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7576515 CX431657 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7552851 CX495662 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7511648 CX740391 3' X. tropicalis NIH_XGC_tropGas5 whole organism NF stage 10 to NF stage 18
TNeu080a08 BX695118 3' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu090m03 BX695378 3' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
IMAGE:8864385 EL701043 3' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
IMAGE:8906589 EL799423 3' X. tropicalis NICHD_XGC_tropTail_m tail NF stage 55 to NF stage 66
IMAGE:7737525 DN025379 3' X. tropicalis NIH_XGC_tropLiv1 liver frog
IMAGE:8914708 EL838135 3' X. tropicalis NICHD_XGC_tropTe1 testis frog
IMAGE:6874307 CB199288 5' X. laevis.S NICHD_XGC_Tad2 whole organism NF stage 62
xlk81e22ex DC061688 5' X. laevis.L Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
xlk164b05ex DC065394 5' X. laevis.L Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
XL412a19ex BP672853 5' X. laevis.S Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL456f14ex BP688093 5' X. laevis.S Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL495e18ex BP708771 5' X. laevis.S Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
IMAGE:3400805 BG037669 5' X. laevis.L NICHD_XGC_Emb3 whole organism NF stage 24 to NF stage 25
IMAGE:7983569 DR726377 5' X. laevis.L NICHD_XGC_Emb10 whole organism NF stage 17 to NF stage 19
IMAGE:8319095 DY558940 5' X. laevis.L NICHD_XGC_Emb10 whole organism NF stage 17 to NF stage 19
IMAGE:7975168 DR722204 5' X. laevis.S NICHD_XGC_Emb9 whole organism NF stage 17 to NF stage 19
XL214i15 BJ626333 5' X. laevis.S NIBB Mochii normalized Xenopus early gastrula library whole organism NF stage 10.5
XL201e11 BJ622523 5' X. laevis.S NIBB Mochii normalized Xenopus early gastrula library whole organism NF stage 10.5
IMAGp998J068299 BX852916 5' X. laevis.L NICHD_XGC_Emb3 whole organism NF stage 24 to NF stage 25
IMAGE:3399560 BE576484 5' X. laevis.S NICHD_XGC_Emb3 whole organism NF stage 24 to NF stage 25
XL173l09 BJ097201 5' X. laevis.S NIBB Mochii normalized Xenopus early gastrula library whole organism NF stage 10.5
IMAGE:5541899 BQ734723 5' X. laevis.L NICHD_XGC_Emb4 whole organism NF stage 31 to NF stage 32
IMAGp998F1212240 BX845982 5' X. laevis.L NICHD_XGC_Emb4 whole organism NF stage 31 to NF stage 32
IMAGE:5542553 BQ735018 5' X. laevis.S NICHD_XGC_Emb4 whole organism NF stage 31 to NF stage 32
IMAGE:6879219 CB206881 5' X. laevis.S NICHD_XGC_Tad1 whole organism NF stage 54 to prometamorphosis stage
xlk111k16ex DC039345 5' X. laevis.L Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
XL066h03 BJ060656 5' X. laevis.L NIBB Mochii normalized Xenopus tailbud library whole organism NF stage 25
IMAGE:6869408 CA980785 5' X. laevis.S Wellcome CRC pSK egg egg unfertilized egg stage
XL087k04 BJ075156 5' X. laevis.S NIBB Mochii normalized Xenopus tailbud library whole organism NF stage 25
IMAGE:6325317 CA973218 5' X. laevis.S Wellcome CRC pSK egg egg unfertilized egg stage
IMAGE:3379263 BF048835 5' X. laevis.S Wellcome CRC pSK egg egg unfertilized egg stage
PBX0067E09 AW638224 5' X. laevis.S Blackshear/Soares normalized Xenopus egg library egg unfertilized egg stage
IMAGp998N099343 BX855465 5' X. laevis.S Cho Li treated gastrula whole organism NF stage 10 to NF stage 12.5
XL457p08ex BP688618 5' X. laevis.L Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL458p08ex BP688950 5' X. laevis.L Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
xlk51l12ex DC033001 5' X. laevis.L Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
xlk64b01ex DC055517 5' X. laevis.S Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
xl221g06 DC100024 5' X. laevis.L Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
xl271d07 DC115090 5' X. laevis.L Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
xl276a11 DC116401 5' X. laevis.L Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
xl277g14 DC116820 5' X. laevis.L Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
xl306c08 DC124913 5' X. laevis.L Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
xl309k14 DC125921 5' X. laevis.L Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
xl322n03 DC129847 5' X. laevis.L Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
xl323d16 DC129972 5' X. laevis.L Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
xl338i07 DC134471 5' X. laevis.L Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
xl238c10 DC105147 5' X. laevis.S Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
XL005h08 BJ030889 5' X. laevis.L NIBB Mochii normalized Xenopus neurula library whole organism NF stage 15
XL006h08 BJ031205 5' X. laevis.L NIBB Mochii normalized Xenopus neurula library whole organism NF stage 15
XL412a19ex BP710861 3' X. laevis.S Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL437p23ex BP717934 3' X. laevis.S Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL456f14ex BP723390 3' X. laevis.S Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
rxlk116p01ex DC008101 3' X. laevis.S Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
rxlk64b01ex DC022105 3' X. laevis.S Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
rxlk66b01ex DC022746 3' X. laevis.S Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
rxlk164b05ex DC031863 3' X. laevis.S Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
XL006h08 BJ046147 3' X. laevis.L NIBB Mochii normalized Xenopus neurula library whole organism NF stage 15
rxl323d16 DC094159 3' X. laevis.L Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
XL173l09 BJ100182 3' X. laevis.S NIBB Mochii normalized Xenopus early gastrula library whole organism NF stage 10.5
XL457p08ex BP723808 3' X. laevis.L Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
IMAGE:3401844 BE575748 3' X. laevis.S NICHD_XGC_Emb1 whole organism NF stage 10
IMAGE:7975168 DR722098 3' X. laevis.S NICHD_XGC_Emb9 whole organism NF stage 17 to NF stage 19
XL087k04 BJ092539 3' X. laevis.S NIBB Mochii normalized Xenopus tailbud library whole organism NF stage 25
IMAGE:4083698 BG022757 3' X. laevis.S Cho Li treated gastrula whole organism NF stage 10 to NF stage 12.5
IMAGE:4083656 BG022751 3' X. laevis.S Cho Li treated gastrula whole organism NF stage 10 to NF stage 12.5
XL201e11 BJ639199 3' X. laevis.S NIBB Mochii normalized Xenopus early gastrula library whole organism NF stage 10.5
XL066h03 BJ078874 3' X. laevis.L NIBB Mochii normalized Xenopus tailbud library whole organism NF stage 25
rxl238c10 DC070889 3' X. laevis.S Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
rxl263f16 DC077945 3' X. laevis.S Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
IMAGE:4083653 BG022850 3' X. laevis.S Cho Li treated gastrula whole organism NF stage 10 to NF stage 12.5
IMAGE:6879219 CB562505 3' X. laevis.S NICHD_XGC_Tad1 whole organism NF stage 54 to prometamorphosis stage
IMAGE:3400805 BG019576 3' X. laevis.L NICHD_XGC_Emb3 whole organism NF stage 24 to NF stage 25
XL005h08 BJ045841 3' X. laevis.L NIBB Mochii normalized Xenopus neurula library whole organism NF stage 15