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Summary Expression Phenotypes Gene Literature (7) GO Terms (24) Nucleotides (226) Proteins (42) Interactants (295) Wiki
XB-GENEPAGE-5816926

Show:     All X. tropicalis X. laevis

Nucleotide sequences for kdm1a - All

RefSeq mRNAs(3)
Models - Gene (24)
Models - mRNA (31)
mRNAs (5)
ESTs (117)

RefSeq mRNAs (3)

Accession Version Protein Name Length Protein Species
XM_002936594 XM_002936594.5 lysine-specific histone demethylase 1A 3234 bp XP_002936640 X. tropicalis
XM_018249584 XM_018249584.2 lysine-specific histone demethylase 1A 3266 bp XP_018105073 X. laevis.S
XM_018246765 XM_018246765.2 lysine-specific histone demethylase 1A 3273 bp XP_018102254 X. laevis.L

Models - Gene (24)

Source Version Model Species
NCBI 10.1 XBXL10_1g10133 X. laevis.S
NCBI 10.1 XBXL10_1g7329 X. laevis.L
NCBI 10.0 XBXT10g017269 X. tropicalis
ENSEMBL 10.0 kdm1a X. tropicalis
Xenbase 9.2 gene17754 X. laevis.L
Xenbase 9.2 gene164 X. laevis.S
JGI 9.1 Xelaev18012573m.g X. laevis.L
JGI 9.1 Xelaev18015253m.g X. laevis.S
Xenbase 9.1 gene3197 X. tropicalis
ENSEMBL 9.1 kdm1a X. tropicalis
JGI 8.0 Xetrov14008534m.g X. tropicalis
JGI 7.2 Xelaev16018856m.g X. laevis.S
JGI 7.1 Xetro.B00244 X. tropicalis
JGI 6.0 XeXenL6RMv10004288m.g X. laevis.S
ENSEMBL 4.1 ENSXETG00000003698 X. tropicalis
JGI 4.1 gw1.223.65.1 X. tropicalis
JGI 4.1 gw1.223.97.1 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_223000020 X. tropicalis
JGI 4.1 gw1.223.30.1 X. tropicalis
JGI 4.1 e_gw1.223.97.1 X. tropicalis
JGI 4.1 e_gw1.223.65.1 X. tropicalis
JGI 4.1 e_gw1.223.30.1 X. tropicalis
JGI 4.1 fgenesh1_pm.C_scaffold_223000010 X. tropicalis
JGI 4.1 fgenesh1_Sanger_cdna.C_scaffold_223000005 X. tropicalis

mRNAs based on gene models(31)

Source Version Model Species
NCBI 10.1 XBmRNA13810 X. laevis.L
NCBI 10.1 XBmRNA18937 X. laevis.S
ENSEMBL 10.0 ENSXETT00000007985 X. tropicalis
ENSEMBL 10.0 ENSXETT00000093080 X. tropicalis
NCBI 10.0 mRNA085428 X. tropicalis
Xenbase 9.2 rna456 X. laevis.S
Xenbase 9.2 rna51898 X. laevis.L
Xenbase 9.1 rna10486 X. tropicalis
JGI 9.1 Xelaev18012573m X. laevis.L
JGI 9.1 Xelaev18015253m X. laevis.S
ENSEMBL 9.1 ENSXETT00000100762 X. tropicalis
ENSEMBL 9.1 ENSXETT00000098940 X. tropicalis
ENSEMBL 9.1 ENSXETT00000093080 X. tropicalis
ENSEMBL 9.1 ENSXETT00000084884 X. tropicalis
ENSEMBL 9.1 ENSXETT00000066206 X. tropicalis
ENSEMBL 9.1 ENSXETT00000007985 X. tropicalis
JGI 8.0 Xetrov14008534m X. tropicalis
JGI 7.2 Xelaev16018856m X. laevis.S
JGI 7.1 Xetro.B00244.1 X. tropicalis
JGI 7.1 Xetro.B00244.2 X. tropicalis
JGI 6.0 XeXenL6RMv10004288m X. laevis.S
JGI 4.1 fgenesh1_pm.C_scaffold_223000010 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_223000020 X. tropicalis
JGI 4.1 e_gw1.223.97.1 X. tropicalis
JGI 4.1 e_gw1.223.65.1 X. tropicalis
JGI 4.1 e_gw1.223.30.1 X. tropicalis
ENSEMBL 4.1 ENSXETT00000007985 X. tropicalis
JGI 4.1 gw1.223.65.1 X. tropicalis
JGI 4.1 gw1.223.97.1 X. tropicalis
JGI 4.1 gw1.223.30.1 X. tropicalis
JGI 4.1 fgenesh1_Sanger_cdna.C_scaffold_223000005 X. tropicalis

mRNAs from cDNA libraries (5)

Clone Accession Species Library Anatomy Stage
IMAGE:6995888 BC168624 X. tropicalis NICHD_XGC_Emb6 whole organism NF stage 14 to NF stage 19
XM_002936594 X. tropicalis
EF113329 X. laevis.S
XM_018249584 X. laevis.S
XM_018246765 X. laevis.L

ESTs (117)

100 ESTs displayed. View all

Clone Accession 5'/3' Species Library Anatomy Stage
IMAGE:6995888 CF238875 5' X. tropicalis NICHD_XGC_Emb6 whole organism NF stage 14 to NF stage 19
TGas095a18 AL968375 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
THdA037c06 CR588414 5' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
THdA037o06 CR577339 5' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
THdA040k19 CR573946 5' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
TTbA038e20 CR447722 5' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
TTbA037l19 CR418747 5' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
TNeu025k08 AL642412 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu038h11 AL657827 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu039h04 AL660867 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu100f21 AL803157 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
IMAGE:5335465 BQ520088 5' X. tropicalis NICHD_XGC_Emb7 whole organism NF stage 20 to NF stage 27
IMAGE:7577012 CX423077 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7529064 CX426215 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7524464 CX439292 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7526288 CX443757 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7568512 CX456548 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7519375 CX479155 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7555585 CX502785 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
TTpA009n04 BX710317 5' X. tropicalis XGC-tadpole whole organism NF stage 35 and 36 to NF stage 40
st19e15 DC168353 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
st43b09 DC177406 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
st91m03 DC189352 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
st100j15 DC190743 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
IMAGE:8951878 EL663790 5' X. tropicalis NICHD_XGC_tropInt_60 intestine frog
IMAGE:7625385 CX403416 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7628719 CX382528 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
TGas023c06 AL628169 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas084a13 AL774542 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas079a18 AL775022 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas075l03 AL776927 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TTpA060o24 BX738524 3' X. tropicalis XGC-tadpole whole organism NF stage 35 and 36 to NF stage 40
IMAGE:5335465 BQ520087 3' X. tropicalis NICHD_XGC_Emb7 whole organism NF stage 20 to NF stage 27
IMAGE:7568512 DR889617 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7524464 CX439291 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
THdA040k19 CR573947 3' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
IMAGE:7577012 CX423076 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7625385 DR899574 3' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7628719 DR900495 3' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
TTbA038e20 CR447723 3' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
rst43b09 DC147125 3' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
rst91m03 DC159281 3' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
IMAGE:7560913 CX463928 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7627312 CX381308 3' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
rst94m03 DC160048 3' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
TGas079a18 BX749100 3' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas095a18 BX751330 3' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas091l03 BX764372 3' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
IMAGE:7555585 DR889355 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
XL092k03 BJ074218 5' X. laevis.S NIBB Mochii normalized Xenopus tailbud library whole organism NF stage 25
PBX0029G07 AW635136 5' X. laevis.S Blackshear/Soares normalized Xenopus egg library egg unfertilized egg stage
PBX0047B05 AW636476 5' X. laevis.S Blackshear/Soares normalized Xenopus egg library egg unfertilized egg stage
PBX0063H04 AW637902 5' X. laevis.S Blackshear/Soares normalized Xenopus egg library egg unfertilized egg stage
PBX0144C10 AW644857 5' X. laevis.S Blackshear/Soares normalized Xenopus egg library egg unfertilized egg stage
IMAGE:4783051 BI449848 5' X. laevis.S Blackshear/Soares normalized Xenopus egg library egg unfertilized egg stage
IMAGE:5279075 BQ398785 5' X. laevis.S Soares NXEG egg unfertilized egg stage
IMAGE:6869436 CA980806 5' X. laevis.S Wellcome CRC pSK egg egg unfertilized egg stage
IMAGE:7296804 CO383699 5' X. laevis.S Blumberg_Cho dorsal blastopore lip upper blastopore lip NF stage 7 to NF stage 9
IMAGE:7296810 CO383870 5' X. laevis.S Blumberg_Cho dorsal blastopore lip upper blastopore lip NF stage 7 to NF stage 9
IMAGE:6865572 CA793628 5' X. laevis.S NICHD_XGC_Emb1 whole organism NF stage 10
IMAGp998J179037 BX853730 5' X. laevis.S Cho Li treated gastrula whole organism NF stage 10 to NF stage 12.5
IMAGE:3420007 BF024775 5' X. laevis.S Wellcome CRC pSK St 10 5 whole organism NF stage 10.5
IMAGE:3420031 BF024782 5' X. laevis.S Wellcome CRC pSK St 10 5 whole organism NF stage 10.5
XL165h06 BJ613849 5' X. laevis.S NIBB Mochii normalized Xenopus early gastrula library whole organism NF stage 10.5
XL217l18 BJ627333 5' X. laevis.S NIBB Mochii normalized Xenopus early gastrula library whole organism NF stage 10.5
IMAGE:3750640 BG038190 5' X. laevis.S Xenopus laevis gastrula non normalized whole organism NF stage 10.5 to NF stage 11.5
xl278d05 DC117042 5' X. laevis.S Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
xl300k08 DC123249 5' X. laevis.S Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
xl310e04 DC126109 5' X. laevis.S Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
xl322m07 DC129832 5' X. laevis.S Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
xl322p17 DC129897 5' X. laevis.S Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
xl325j02 DC130708 5' X. laevis.S Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
xl333a14 DC132985 5' X. laevis.S Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
xl340a17 DC134924 5' X. laevis.S Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
XL416g03ex BP674310 5' X. laevis.S Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL417c11ex BP674576 5' X. laevis.S Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL401o14ex BP675761 5' X. laevis.S Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL424k01ex BP677025 5' X. laevis.S Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL450m10ex BP686269 5' X. laevis.S Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL452j11ex BP686896 5' X. laevis.S Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL508o08ex BP703573 5' X. laevis.S Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL515g19ex BP705613 5' X. laevis.S Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL518f16ex BP706631 5' X. laevis.S Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
xlk52f20ex DC033216 5' X. laevis.S Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
xlk58b17ex DC035037 5' X. laevis.S Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
xlk6i21ex DC057578 5' X. laevis.S Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
IMAGE:4085129 BI348127 5' X. laevis.S Wellcome CRC pRN3 St13 17 egg animal cap whole organism NF stage 13 to NF stage 21
XL005n22 BJ031033 5' X. laevis.S NIBB Mochii normalized Xenopus neurula library whole organism NF stage 15
IMAGE:7982276 DR715402 5' X. laevis.S NICHD_XGC_Emb10 whole organism NF stage 17 to NF stage 19
IMAGE:7983667 DR722179 5' X. laevis.S NICHD_XGC_Emb10 whole organism NF stage 17 to NF stage 19
IMAGE:7976846 DR725603 5' X. laevis.S NICHD_XGC_Emb9 whole organism NF stage 17 to NF stage 19
IMAGE:8317842 DY559252 5' X. laevis.S NICHD_XGC_Emb10 whole organism NF stage 17 to NF stage 19
IMAGE:8318716 DY567907 5' X. laevis.S NICHD_XGC_Emb10 whole organism NF stage 17 to NF stage 19
IMAGE:3549941 BG578560 5' X. laevis.S Wellcome CRC pRN3 St19 26 whole organism NF stage 19 to NF stage 26
M073 DV034190 5' X. laevis.S Cornea-lens transdifferentiation library cornea NF stage 50 to NF stage 52
IMAGE:8542471 EB474121 5' X. laevis.S NICHD_XGC_tail_m tail NF stage 56 to NF stage 62
IMAGE:6874140 CB199125 5' X. laevis.S NICHD_XGC_Tad2 whole organism NF stage 62
PBX0029G06 AW635135 5' X. laevis.S Blackshear/Soares normalized Xenopus egg library egg unfertilized egg stage
XL461h13ex BP725015 3' X. laevis.S Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5