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Summary Expression Phenotypes Gene Literature (4) GO Terms (34) Nucleotides (243) Proteins (56) Interactants (69) Wiki
XB-GENEPAGE-5924612

Show:     All X. tropicalis X. laevis

Nucleotide sequences for pif1 - All

RefSeq mRNAs(3)
Models - Gene (28)
Models - mRNA (39)
mRNAs (7)
ESTs (64)

RefSeq mRNAs (3)

Accession Version Protein Name Length Protein Species
NM_001016603 NM_001016603.2 ATP-dependent DNA helicase PIF1 2137 bp NP_001016603 X. tropicalis
XM_004913955 XM_004913955.3 XP_004914012.2 ATP-dependent DNA helicase PIF1 isoform X1 2246 bp XP_004914012 X. tropicalis
NM_001096061 NM_001096061.1 ATP-dependent DNA helicase PIF1 2089 bp NP_001089530 X. laevis.L

Models - Gene (28)

Source Version Model Species
NCBI 10.1 XBXL10_1g19108 X. laevis.L
NCBI 10.0 XBXT10g009082 X. tropicalis
ENSEMBL 10.0 pif1 X. tropicalis
Xenbase 9.2 gene7706 X. laevis.L
JGI 9.1 Xelaev18023037m.g X. laevis.L
Xenbase 9.1 gene18869 X. tropicalis
ENSEMBL 9.1 decr1 X. tropicalis
ENSEMBL 9.1 pif1 X. tropicalis
JGI 8.0 Xetrov14019057m.g X. tropicalis
JGI 7.2 Xelaev16068400m.g X. laevis.L
JGI 7.1 Xetro.D01855 X. tropicalis
JGI 6.0 XeXenL6RMv10012147m.g X. laevis.L
ENSEMBL 4.1 ENSXETG00000009544 X. tropicalis
JGI 4.1 fgenesh1_kg.C_scaffold_4000021 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_4000075 X. tropicalis
JGI 4.1 fgenesh1_Sanger_cdna.C_scaffold_4000017 X. tropicalis
JGI 4.1 e_gw1.4.12.1 X. tropicalis
JGI 4.1 e_gw1.4.13.1 X. tropicalis
JGI 4.1 e_gw1.4.56.1 X. tropicalis
JGI 4.1 gw1.4.12.1 X. tropicalis
JGI 4.1 gw1.4.13.1 X. tropicalis
JGI 4.1 gw1.4.56.1 X. tropicalis
JGI 4.1 estExt_FilteredModels1.C_40038 X. tropicalis
JGI 4.1 estExt_Genewise1.C_40012 X. tropicalis
JGI 4.1 estExt_Genewise1.C_40013 X. tropicalis
JGI 4.1 estExt_Genewise1.C_40056 X. tropicalis
JGI 4.1 estExt_fgenesh1_kg.C_40020 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_40074 X. tropicalis

mRNAs based on gene models(39)

Source Version Model Species
NCBI 10.1 XBmRNA35301 X. laevis.L
ENSEMBL 10.0 ENSXETT00000021069 X. tropicalis
ENSEMBL 10.0 ENSXETT00000094979 X. tropicalis
NCBI 10.0 mRNA044968 X. tropicalis
Xenbase 9.2 rna22507 X. laevis.L
Xenbase 9.1 rna39775 X. tropicalis
JGI 9.1 Xelaev18023037m X. laevis.L
ENSEMBL 9.1 ENSXETT00000097082 X. tropicalis
ENSEMBL 9.1 ENSXETT00000095000 X. tropicalis
ENSEMBL 9.1 ENSXETT00000094979 X. tropicalis
ENSEMBL 9.1 ENSXETT00000087549 X. tropicalis
ENSEMBL 9.1 ENSXETT00000082011 X. tropicalis
ENSEMBL 9.1 ENSXETT00000074224 X. tropicalis
ENSEMBL 9.1 ENSXETT00000071227 X. tropicalis
ENSEMBL 9.1 ENSXETT00000069374 X. tropicalis
ENSEMBL 9.1 ENSXETT00000060133 X. tropicalis
ENSEMBL 9.1 ENSXETT00000031959 X. tropicalis
ENSEMBL 9.1 ENSXETT00000021069 X. tropicalis
JGI 8.0 Xetrov14019057m X. tropicalis
JGI 7.2 Xelaev16068400m X. laevis.L
JGI 7.1 Xetro.D01855.2 X. tropicalis
JGI 7.1 Xetro.D01855.1 X. tropicalis
JGI 6.0 XeXenL6RMv10012147m X. laevis.L
JGI 4.1 gw1.4.12.1 X. tropicalis
JGI 4.1 fgenesh1_Sanger_cdna.C_scaffold_4000017 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_4000075 X. tropicalis
JGI 4.1 fgenesh1_kg.C_scaffold_4000021 X. tropicalis
JGI 4.1 estExt_Genewise1.C_40056 X. tropicalis
JGI 4.1 estExt_Genewise1.C_40013 X. tropicalis
JGI 4.1 estExt_Genewise1.C_40012 X. tropicalis
JGI 4.1 estExt_FilteredModels1.C_40038 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_40074 X. tropicalis
JGI 4.1 estExt_fgenesh1_kg.C_40020 X. tropicalis
JGI 4.1 e_gw1.4.13.1 X. tropicalis
JGI 4.1 e_gw1.4.56.1 X. tropicalis
JGI 4.1 e_gw1.4.12.1 X. tropicalis
ENSEMBL 4.1 ENSXETT00000021069 X. tropicalis
JGI 4.1 gw1.4.56.1 X. tropicalis
JGI 4.1 gw1.4.13.1 X. tropicalis

mRNAs from cDNA libraries (7)

Clone Accession Species Library Anatomy Stage
IMAGE:9040255 BC170996 X. tropicalis
TEgg056m14 CR760549 X. tropicalis
NM_001016603 X. tropicalis
XM_004913955 X. tropicalis
IMAGE:6871011 BC097805 X. laevis.L Wellcome CRC pSK egg egg unfertilized egg stage
DQ119644 X. laevis.L
NM_001096061 X. laevis.L

ESTs (64)

Clone Accession 5'/3' Species Library Anatomy Stage
st95e10 DC190177 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
IMAGE:7754917 DN056855 5' X. tropicalis NIH_XGC_tropKid1 mesonephric kidney frog
THdA031b19 CR571384 5' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
THdA031b15 CR571380 5' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
TTbA075k20 CR424641 5' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
TNeu086k10 AL791902 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
IMAGE:7522248 CX471441 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
TGas100a16 AL965107 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas058j16 AL680245 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas055f19 AL676345 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas029a22 AL652404 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
THdA031b19 CR571385 3' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
rst95e10 DC160172 3' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
rst97e10 DC162068 3' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
TGas055f19 BX747065 3' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
IMAGE:7522248 CX471440 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
TTbA075k20 CR424642 3' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
THdA031b15 CR571381 3' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
IMAGE:7754917 DN056854 3' X. tropicalis NIH_XGC_tropKid1 mesonephric kidney frog
IMAGE:3379357 BF048910 5' X. laevis.L Wellcome CRC pSK egg egg unfertilized egg stage
IMAGE:3744838 BF426819 5' X. laevis.L Xenopus laevis unfertilized egg cDNA library egg unfertilized egg stage
XL175p22 BJ616181 5' X. laevis.L NIBB Mochii normalized Xenopus early gastrula library whole organism NF stage 10.5
PBX0069G09 AW638421 5' X. laevis.L Blackshear/Soares normalized Xenopus egg library egg unfertilized egg stage
IMAGE:3437370 BF614369 5' X. laevis.L Wellcome CRC pRN3 oocyte oocyte unspecified stage
IMAGE:3437368 BF614368 5' X. laevis.L Wellcome CRC pRN3 oocyte oocyte unspecified stage
XENOPUS_SOURCE_ID:xlnoc003g02 AW200019 5' X. laevis.L Xenopus laevis oocyte oocyte NF stage 5 (16-cell) to NF stage 6 (32-cell)
XL072k08 BJ061331 5' X. laevis.L NIBB Mochii normalized Xenopus tailbud library whole organism NF stage 25
IMAGp998C079026 BX850122 5' X. laevis.L Xenopus laevis oocyte oocyte NF stage 5 (16-cell) to NF stage 6 (32-cell)
XL481l19ex BP697462 5' X. laevis.L Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL038o09 BJ039911 5' X. laevis.L NIBB Mochii normalized Xenopus neurula library whole organism NF stage 15
IMAGE:3746262 BF427371 5' X. laevis.L Xenopus laevis oocyte non normalized oocyte NF stage 5 (16-cell) to NF stage 6 (32-cell)
XL055a18 BJ069937 5' X. laevis.L NIBB Mochii normalized Xenopus tailbud library whole organism NF stage 25
IMAGE:3745934 BE680656 5' X. laevis.L Xenopus laevis oocyte non normalized oocyte NF stage 5 (16-cell) to NF stage 6 (32-cell)
IMAGE:3745789 BE680556 5' X. laevis.L Xenopus laevis oocyte non normalized oocyte NF stage 5 (16-cell) to NF stage 6 (32-cell)
IMAGE:6872796 CB197886 5' X. laevis.L NICHD_XGC_Tad2 whole organism NF stage 62
PBX0099F07 AW640855 5' X. laevis.L Blackshear/Soares normalized Xenopus egg library egg unfertilized egg stage
PBX0129A04 AW643460 5' X. laevis.L Blackshear/Soares normalized Xenopus egg library egg unfertilized egg stage
IMAGE:3301024 BE131969 5' X. laevis.L Blackshear/Soares normalized Xenopus egg library egg unfertilized egg stage
IMAGE:3378471 BE491332 5' X. laevis.L Wellcome CRC pSK egg egg unfertilized egg stage
IMAGE:4783256 BM261155 5' X. laevis.L Blackshear/Soares normalized Xenopus egg library egg unfertilized egg stage
IMAGE:6323290 CA971778 5' X. laevis.L Wellcome CRC pSK egg egg unfertilized egg stage
IMAGE:6870491 CA982949 5' X. laevis.L Wellcome CRC pSK egg egg unfertilized egg stage
IMAGE:6871385 CA983148 5' X. laevis.L Wellcome CRC pSK egg egg unfertilized egg stage
IMAGE:6871011 CA983450 5' X. laevis.L Wellcome CRC pSK egg egg unfertilized egg stage
PBX0080H07 AW639355 5' X. laevis.L Blackshear/Soares normalized Xenopus egg library egg unfertilized egg stage
XL164a01 BJ613469 5' X. laevis.L NIBB Mochii normalized Xenopus early gastrula library whole organism NF stage 10.5
IMAGE:3744839 BG016515 3' X. laevis.L Xenopus laevis unfertilized egg cDNA library egg unfertilized egg stage
IMAGE:3744838 BG159979 3' X. laevis.L Xenopus laevis unfertilized egg cDNA library egg unfertilized egg stage
IMAGE:3744911 BG234529 3' X. laevis.L Xenopus laevis unfertilized egg cDNA library egg unfertilized egg stage
IMAGE:4783256 BM261073 3' X. laevis.L Blackshear/Soares normalized Xenopus egg library egg unfertilized egg stage
IMAGE:3746262 BG016388 3' X. laevis.L Xenopus laevis oocyte non normalized oocyte NF stage 5 (16-cell) to NF stage 6 (32-cell)
IMAGE:5278847 BQ398729 3' X. laevis.L Soares NXEG egg unfertilized egg stage
IMAGE:3378471 BE491491 3' X. laevis.L Wellcome CRC pSK egg egg unfertilized egg stage
XL038o09 BJ053459 3' X. laevis.L NIBB Mochii normalized Xenopus neurula library whole organism NF stage 15
IMAGE:3437368 BF232417 3' X. laevis.L Wellcome CRC pRN3 oocyte oocyte unspecified stage
XENOPUS_SOURCE_ID:xlnoc003g02 AW147852 3' X. laevis.L Xenopus laevis oocyte oocyte NF stage 5 (16-cell) to NF stage 6 (32-cell)
IMAGE:6872796 CB564825 3' X. laevis.L NICHD_XGC_Tad2 whole organism NF stage 62
XL055a18 BJ086975 3' X. laevis.L NIBB Mochii normalized Xenopus tailbud library whole organism NF stage 25
IMAGE:3743293 BE678450 3' X. laevis.L Xenopus laevis unfertilized egg cDNA library egg unfertilized egg stage
IMAGE:4083553 BG022841 3' X. laevis.L Cho Li treated gastrula whole organism NF stage 10 to NF stage 12.5
IMAGE:3379357 BF049405 3' X. laevis.L Wellcome CRC pSK egg egg unfertilized egg stage
XL072k08 BJ079522 3' X. laevis.L NIBB Mochii normalized Xenopus tailbud library whole organism NF stage 25
XL164a01 BJ630071 3' X. laevis.L NIBB Mochii normalized Xenopus early gastrula library whole organism NF stage 10.5
XL175p22 BJ632763 3' X. laevis.L NIBB Mochii normalized Xenopus early gastrula library whole organism NF stage 10.5