Click here to close Hello! We notice that you are using Internet Explorer, which is not supported by Xenbase and may cause the site to display incorrectly. We suggest using a current version of Chrome, FireFox, or Safari.

Summary Expression Phenotypes Gene Literature (1) GO Terms (50) Nucleotides (299) Proteins (90) Interactants (87) Wiki
XB-GENEPAGE-5956641

Show:     All X. tropicalis X. laevis

Nucleotide sequences for syne1 - All

RefSeq mRNAs(13)
Models - Gene (35)
Models - mRNA (45)
mRNAs (15)
ESTs (93)

RefSeq mRNAs (13)

Accession Version Protein Name Length Protein Species
NM_001127037 NM_001127037.2 nesprin-1 27487 bp NP_001120509 X. tropicalis
XM_018093787 XM_018093787.2 nesprin-1 isoform X1 27459 bp XP_017949276 X. tropicalis
XM_018093789 XM_018093789.2 nesprin-1 isoform X2 27429 bp XP_017949278 X. tropicalis
XM_018093790 XM_018093790.2 nesprin-1 isoform X3 27336 bp XP_017949279 X. tropicalis
XM_018093791 XM_018093791.2 nesprin-1 isoform X4 27318 bp XP_017949280 X. tropicalis
XM_018093792 XM_018093792.2 nesprin-1 isoform X5 27419 bp XP_017949281 X. tropicalis
XM_031901525 XM_031901525.1 XP_031757385.1 nesprin-1 isoform X6 3612 bp XP_031757385 X. tropicalis
XM_018263031 XM_018263031.2 nesprin-1 isoform X3 27532 bp XP_018118520 X. laevis.L
XM_041562725 XM_041562725.1 XP_041418659.1 nesprin-1 isoform X1 27405 bp XP_041418659 X. laevis.L
XM_041562726 XM_041562726.1 XP_041418660.1 nesprin-1 isoform X2 27378 bp XP_041418660 X. laevis.L
XM_041562727 XM_041562727.1 XP_041418661.1 nesprin-1 isoform X4 3705 bp XP_041418661 X. laevis.L
XM_041564429 XM_041564429.1 XP_041420363.1 nesprin-1-like isoform X1 2979 bp XP_041420363 X. laevis.S
XM_041564430 XM_041564430.1 XP_041420364.1 nesprin-1-like isoform X2 2558 bp XP_041420364 X. laevis.S

Models - Gene (35)

Source Version Model Species
NCBI 10.1 XBXL10_1g25242 X. laevis.S
NCBI 10.1 XBXL10_1g23151 X. laevis.L
NCBI 10.0 XBXT10g012386 X. tropicalis
ENSEMBL 10.0 syne1 X. tropicalis
Xenbase 9.2 gene15183 X. laevis.S
Xenbase 9.2 gene19212 X. laevis.L
JGI 9.1 Xelaev18028999m.g X. laevis.S
JGI 9.1 Xelaev18026741m.g X. laevis.L
Xenbase 9.1 gene20525 X. tropicalis
ENSEMBL 9.1 syne1 X. tropicalis
JGI 8.0 Xetrov14023803m.g X. tropicalis
JGI 7.2 Xelaev16004736m.g X. laevis.L
JGI 7.1 Xetro.E01120 X. tropicalis
JGI 6.0 XeXenL6RMv10043157m.g X. laevis.L
JGI 6.0 XeXenL6RMv10046228m.g X. laevis.L
ENSEMBL 4.1 ENSXETG00000012367 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_206000013 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_206000014 X. tropicalis
JGI 4.1 fgenesh1_pm.C_scaffold_206000003 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_206000012 X. tropicalis
JGI 4.1 e_gw1.206.12.1 X. tropicalis
JGI 4.1 e_gw1.206.13.1 X. tropicalis
JGI 4.1 gw1.206.11.1 X. tropicalis
JGI 4.1 gw1.206.12.1 X. tropicalis
JGI 4.1 gw1.206.13.1 X. tropicalis
JGI 4.1 estExt_FilteredModels1.C_2060007 X. tropicalis
JGI 4.1 estExt_Genewise1.C_2060011 X. tropicalis
JGI 4.1 estExt_Genewise1.C_2060012 X. tropicalis
JGI 4.1 estExt_Genewise1.C_2060013 X. tropicalis
JGI 4.1 estExt_fgenesh1_kg.C_2060002 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_2060012 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_2060013 X. tropicalis
JGI 4.1 estExt_fgenesh1_pm.C_2060003 X. tropicalis
JGI 4.1 fgenesh1_kg.C_scaffold_206000002 X. tropicalis
JGI 4.1 e_gw1.206.11.1 X. tropicalis

mRNAs based on gene models(45)

Source Version Model Species
NCBI 10.1 XBmRNA43118 X. laevis.L
NCBI 10.1 XBmRNA47113 X. laevis.S
NCBI 10.0 mRNA061348 X. tropicalis
ENSEMBL 10.0 ENSXETT00000027049 X. tropicalis
ENSEMBL 10.0 ENSXETT00000122664 X. tropicalis
Xenbase 9.2 rna44325 X. laevis.S
Xenbase 9.2 rna56123 X. laevis.L
ENSEMBL 9.1 ENSXETT00000100244 X. tropicalis
ENSEMBL 9.1 ENSXETT00000100637 X. tropicalis
ENSEMBL 9.1 ENSXETT00000090635 X. tropicalis
ENSEMBL 9.1 ENSXETT00000027049 X. tropicalis
ENSEMBL 9.1 ENSXETT00000073165 X. tropicalis
ENSEMBL 9.1 ENSXETT00000076637 X. tropicalis
ENSEMBL 9.1 ENSXETT00000084317 X. tropicalis
ENSEMBL 9.1 ENSXETT00000087588 X. tropicalis
ENSEMBL 9.1 ENSXETT00000096079 X. tropicalis
Xenbase 9.1 rna42387 X. tropicalis
JGI 9.1 Xelaev18026741m X. laevis.L
JGI 9.1 Xelaev18028999m X. laevis.S
JGI 8.0 Xetrov14023803m X. tropicalis
JGI 7.2 Xelaev16004736m X. laevis.L
JGI 7.1 Xetro.E01120.1 X. tropicalis
JGI 7.1 Xetro.E01120.2 X. tropicalis
JGI 6.0 XeXenL6RMv10043157m X. laevis.L
JGI 6.0 XeXenL6RMv10046228m X. laevis.L
JGI 4.1 fgenesh1_pg.C_scaffold_206000013 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_206000014 X. tropicalis
JGI 4.1 fgenesh1_pm.C_scaffold_206000003 X. tropicalis
JGI 4.1 gw1.206.11.1 X. tropicalis
JGI 4.1 gw1.206.12.1 X. tropicalis
JGI 4.1 gw1.206.13.1 X. tropicalis
JGI 4.1 estExt_fgenesh1_kg.C_2060002 X. tropicalis
JGI 4.1 e_gw1.206.13.1 X. tropicalis
JGI 4.1 e_gw1.206.11.1 X. tropicalis
ENSEMBL 4.1 ENSXETT00000027049 X. tropicalis
JGI 4.1 e_gw1.206.12.1 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_2060012 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_2060013 X. tropicalis
JGI 4.1 estExt_FilteredModels1.C_2060007 X. tropicalis
JGI 4.1 estExt_fgenesh1_pm.C_2060003 X. tropicalis
JGI 4.1 estExt_Genewise1.C_2060011 X. tropicalis
JGI 4.1 estExt_Genewise1.C_2060012 X. tropicalis
JGI 4.1 estExt_Genewise1.C_2060013 X. tropicalis
JGI 4.1 fgenesh1_kg.C_scaffold_206000002 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_206000012 X. tropicalis

mRNAs from cDNA libraries (15)

Clone Accession Species Library Anatomy Stage
IMAGE:7692213 BC161402 X. tropicalis NIH_XGC_tropTe4 testis frog
NM_001127037 X. tropicalis
XM_018093787 X. tropicalis
XM_018093789 X. tropicalis
XM_018093790 X. tropicalis
XM_018093791 X. tropicalis
XM_018093792 X. tropicalis
XM_031901525 X. tropicalis
IMAGE:5542219 BC049289 X. laevis.L NICHD_XGC_Emb4 whole organism NF stage 31 to NF stage 32
XM_018263031 X. laevis.L
XM_041562725 X. laevis.L
XM_041562726 X. laevis.L
XM_041562727 X. laevis.L
XM_041564429 X. laevis.S
XM_041564430 X. laevis.S

ESTs (93)

Clone Accession 5'/3' Species Library Anatomy Stage
IMAGE:7649898 CX810111 5' X. tropicalis NIH_XGC_tropBrn2 brain frog
IMAGE:8926958 EL674615 5' X. tropicalis NICHD_XGC_tropThy1 thymus frog
IMAGE:7792975 CX813719 5' X. tropicalis NIH_XGC_tropBrn2 brain frog
IMAGE:8926785 EL673382 5' X. tropicalis NICHD_XGC_tropThy1 thymus frog
IMAGE:7652209 CX814532 5' X. tropicalis NIH_XGC_tropBrn3 brain frog
TNeu080e07 AL775884 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
IMAGE:7657780 CX830237 5' X. tropicalis NIH_XGC_tropBrn3 brain frog
IMAGE:7640960 CX794309 5' X. tropicalis NIH_XGC_tropBrn2 brain frog
IMAGE:7658376 CX837171 5' X. tropicalis NIH_XGC_tropBrn3 brain frog
THdA035j02 CR569931 5' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
IMAGE:7664543 CX849285 5' X. tropicalis NIH_XGC_tropBrn4 brain frog
IMAGE:7671361 CX878890 5' X. tropicalis NIH_XGC_tropBrn4 brain frog
IMAGE:7642561 CX796851 5' X. tropicalis NIH_XGC_tropBrn2 brain frog
IMAGE:7687252 CX909409 5' X. tropicalis NIH_XGC_tropTe4 testis frog
IMAGE:8889430 EL848856 5' X. tropicalis NICHD_XGC_trop_25 whole organism NF stage 25
IMAGE:7690288 CX915206 5' X. tropicalis NIH_XGC_tropTe4 testis frog
IMAGE:7645241 CX801579 5' X. tropicalis NIH_XGC_tropBrn2 brain frog
IMAGE:7691844 CX917841 5' X. tropicalis NIH_XGC_tropTe4 testis frog
IMAGE:8856863 EL819754 5' X. tropicalis NICHD_XGC_tropTe1 testis frog
IMAGE:7692213 CX918454 5' X. tropicalis NIH_XGC_tropTe4 testis frog
IMAGE:7645824 CX803331 5' X. tropicalis NIH_XGC_tropBrn2 brain frog
IMAGE:7794579 CX929065 5' X. tropicalis NIH_XGC_tropTe4 testis frog
IMAGE:8870426 EL711963 5' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
CAAO5718 CX937879 5' X. tropicalis NIH_XGC_tropTe5 testis frog
IMAGE:7646465 CX803809 5' X. tropicalis NIH_XGC_tropBrn2 brain frog
IMAGE:7706744 CX958690 5' X. tropicalis NIH_XGC_tropTe5 testis frog
IMAGE:7740934 DN031443 5' X. tropicalis NIH_XGC_tropLiv1 liver frog
IMAGE:7618966 CX346578 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7798982 DN060215 5' X. tropicalis NIH_XGC_tropFat1 fat body frog
IMAGE:7647415 CX805783 5' X. tropicalis NIH_XGC_tropBrn2 brain frog
IMAGE:7804478 DR840150 5' X. tropicalis NIH_XGC_tropFat1 fat body frog
IMAGE:7618390 CX363246 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7647440 CX805952 5' X. tropicalis NIH_XGC_tropBrn2 brain frog
IMAGE:9012497 EL857744 5' X. tropicalis NICHD_XGC_trop_25 whole organism NF stage 25
IMAGE:7647444 CX805980 5' X. tropicalis NIH_XGC_tropBrn2 brain frog
IMAGE:7647980 CX806735 5' X. tropicalis NIH_XGC_tropBrn2 brain frog
IMAGE:7604622 CX411833 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7647892 CX806783 5' X. tropicalis NIH_XGC_tropBrn2 brain frog
TTbA061g01 CR420512 5' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
IMAGE:7649719 CX809871 5' X. tropicalis NIH_XGC_tropBrn2 brain frog
xtbs32C08 CN089811 5' X. tropicalis Xenopus tropicalis xtbs plasmid library central nervous system NF stage 58 to NF stage 64
IMAGE:7804478 DR840149 3' X. tropicalis NIH_XGC_tropFat1 fat body frog
TNeu080e07 BX695172 3' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TTbA061g01 CR420513 3' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
IMAGE:7618966 CX346577 3' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7604622 CX411832 3' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
xtbs32C08 CN089810 3' X. tropicalis Xenopus tropicalis xtbs plasmid library central nervous system NF stage 58 to NF stage 64
IMAGE:7640960 CX794308 3' X. tropicalis NIH_XGC_tropBrn2 brain frog
IMAGE:7642561 CX796850 3' X. tropicalis NIH_XGC_tropBrn2 brain frog
IMAGE:7645241 CX801578 3' X. tropicalis NIH_XGC_tropBrn2 brain frog
IMAGE:7645824 CX803330 3' X. tropicalis NIH_XGC_tropBrn2 brain frog
IMAGE:7646465 CX803808 3' X. tropicalis NIH_XGC_tropBrn2 brain frog
IMAGE:7647415 CX805782 3' X. tropicalis NIH_XGC_tropBrn2 brain frog
IMAGE:7647440 CX805951 3' X. tropicalis NIH_XGC_tropBrn2 brain frog
IMAGE:7647444 CX805979 3' X. tropicalis NIH_XGC_tropBrn2 brain frog
IMAGE:7647892 CX806782 3' X. tropicalis NIH_XGC_tropBrn2 brain frog
IMAGE:7649719 CX809870 3' X. tropicalis NIH_XGC_tropBrn2 brain frog
IMAGE:7649898 CX810110 3' X. tropicalis NIH_XGC_tropBrn2 brain frog
IMAGE:7792975 CX813718 3' X. tropicalis NIH_XGC_tropBrn2 brain frog
IMAGE:7652209 CX814531 3' X. tropicalis NIH_XGC_tropBrn3 brain frog
IMAGE:7657780 CX830236 3' X. tropicalis NIH_XGC_tropBrn3 brain frog
IMAGE:7658376 CX837170 3' X. tropicalis NIH_XGC_tropBrn3 brain frog
IMAGE:7664543 CX849284 3' X. tropicalis NIH_XGC_tropBrn4 brain frog
IMAGE:7687252 CX909408 3' X. tropicalis NIH_XGC_tropTe4 testis frog
IMAGE:7690288 CX915205 3' X. tropicalis NIH_XGC_tropTe4 testis frog
IMAGE:7691844 CX917840 3' X. tropicalis NIH_XGC_tropTe4 testis frog
IMAGE:7692213 CX918453 3' X. tropicalis NIH_XGC_tropTe4 testis frog
IMAGE:7794579 CX929064 3' X. tropicalis NIH_XGC_tropTe4 testis frog
CAAO5718 CX937878 3' X. tropicalis NIH_XGC_tropTe5 testis frog
IMAGE:7706744 CX958689 3' X. tropicalis NIH_XGC_tropTe5 testis frog
IMAGE:7798982 DN060214 3' X. tropicalis NIH_XGC_tropFat1 fat body frog
IMAGE:8870426 EL711962 3' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
IMAGE:8926785 EL673381 3' X. tropicalis NICHD_XGC_tropThy1 thymus frog
IMAGE:8926958 EL674614 3' X. tropicalis NICHD_XGC_tropThy1 thymus frog
IMAGE:8856863 EL819755 3' X. tropicalis NICHD_XGC_tropTe1 testis frog
IMAGE:8889430 EL848857 3' X. tropicalis NICHD_XGC_trop_25 whole organism NF stage 25
IMAGE:9012497 EL857745 3' X. tropicalis NICHD_XGC_trop_25 whole organism NF stage 25
IMAGp998C2012241 BX854996 5' X. laevis.L NICHD_XGC_Emb4 whole organism NF stage 31 to NF stage 32
IMAGE:5542219 BQ736195 5' X. laevis.L NICHD_XGC_Emb4 whole organism NF stage 31 to NF stage 32
XL084i11 BJ065905 5' X. laevis.L NIBB Mochii normalized Xenopus tailbud library whole organism NF stage 25
XL105b19 BJ067877 5' X. laevis.L NIBB Mochii normalized Xenopus tailbud library whole organism NF stage 25
XL055p11 BJ070234 5' X. laevis.L NIBB Mochii normalized Xenopus tailbud library whole organism NF stage 25
XL097b05 BJ073461 5' X. laevis.L NIBB Mochii normalized Xenopus tailbud library whole organism NF stage 25
XL092c04 BJ074174 5' X. laevis.L NIBB Mochii normalized Xenopus tailbud library whole organism NF stage 25
IMAGE:6876270 CB201132 5' X. laevis.L NICHD_XGC_Tad2 whole organism NF stage 62
IMAGE:8317932 DY549609 5' X. laevis.L NICHD_XGC_Emb10 whole organism NF stage 17 to NF stage 19
XL072i12 BJ061294 5' X. laevis.L NIBB Mochii normalized Xenopus tailbud library whole organism NF stage 25
XL092c04 BJ088184 3' X. laevis.L NIBB Mochii normalized Xenopus tailbud library whole organism NF stage 25
IMAGE:6876270 CB565530 3' X. laevis.L NICHD_XGC_Tad2 whole organism NF stage 62
XL097b05 BJ091410 3' X. laevis.L NIBB Mochii normalized Xenopus tailbud library whole organism NF stage 25
XL084i11 BJ083227 3' X. laevis.L NIBB Mochii normalized Xenopus tailbud library whole organism NF stage 25
XL055p11 BJ087270 3' X. laevis.L NIBB Mochii normalized Xenopus tailbud library whole organism NF stage 25
XL072i12 BJ079486 3' X. laevis.L NIBB Mochii normalized Xenopus tailbud library whole organism NF stage 25