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Summary Expression Phenotypes Gene Literature (61) GO Terms (68) Nucleotides (512) Proteins (72) Interactants (1137) Wiki
XB-GENEPAGE-6258352

Show:     All X. tropicalis X. laevis

Nucleotide sequences for col2a1 - All

RefSeq mRNAs(6)
Models - Gene (28)
Models - mRNA (50)
mRNAs (12)
ESTs (389)

RefSeq mRNAs (6)

Accession Version Protein Name Length Protein Species
NM_203889 NM_203889.1 collagen alpha-1(II) chain precursor 6119 bp NP_989220 X. tropicalis
XM_012956661 XM_012956661.3 collagen alpha-1(II) chain isoform X1 5949 bp XP_012812115 X. tropicalis
XM_012956663 XM_012956663.3 collagen alpha-1(II) chain isoform X2 5901 bp XP_012812117 X. tropicalis
NM_001087791 NM_001087791.1 collagen, type II, alpha 1 S homeolog precursor 5367 bp NP_001081260 X. laevis.S
NM_001087789 NM_001087789.1 collagen alpha-1(II) chain precursor 5086 bp NP_001081258 X. laevis.L
XM_018244858 XM_018244858.2 collagen alpha-1(II) chain isoform X1 5775 bp XP_018100347 X. laevis.L

Models - Gene (28)

Source Version Model Species
NCBI 10.1 XBXL10_1g10813 X. laevis.S
NCBI 10.1 XBXL10_1g8210 X. laevis.L
NCBI 10.0 XBXT10g005215 X. tropicalis
ENSEMBL 10.0 col2a1 X. tropicalis
Xenbase 9.2 gene1257 X. laevis.L
Xenbase 9.2 gene39538 X. laevis.S
JGI 9.1 Xelaev18013523m.g X. laevis.L
JGI 9.1 Xelaev18015990m.g X. laevis.S
Xenbase 9.1 gene7581 X. tropicalis
ENSEMBL 9.1 col2a1 X. tropicalis
JGI 7.1 Xetro.B01457 X. tropicalis
JGI 6.0 XeXenL6RMv10054064m.g X. laevis.L
JGI 6.0 XeXenL6RMv10019283m.g X. laevis.L
JGI 6.0 XeXenL6RMv10044079m.g X. laevis.S
JGI 4.1 fgenesh1_pm.C_scaffold_161000001 X. tropicalis
JGI 4.1 gw1.161.52.1 X. tropicalis
JGI 4.1 gw1.161.72.1 X. tropicalis
JGI 4.1 gw1.161.73.1 X. tropicalis
JGI 4.1 e_gw1.161.52.1 X. tropicalis
JGI 4.1 e_gw1.161.72.1 X. tropicalis
JGI 4.1 e_gw1.161.73.1 X. tropicalis
JGI 4.1 estExt_Genewise1.C_1610052 X. tropicalis
JGI 4.1 estExt_Genewise1.C_1610072 X. tropicalis
JGI 4.1 estExt_Genewise1.C_1610073 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_1610003 X. tropicalis
JGI 4.1 estExt_fgenesh1_pm.C_1610001 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_161000003 X. tropicalis
ENSEMBL 4.1 ENSXETG00000010655 X. tropicalis

mRNAs based on gene models(50)

Source Version Model Species
NCBI 10.1 XBmRNA15522 X. laevis.L
NCBI 10.1 XBmRNA20347 X. laevis.S
ENSEMBL 10.0 ENSXETT00000023334 X. tropicalis
ENSEMBL 10.0 ENSXETT00000043834 X. tropicalis
NCBI 10.0 mRNA025878 X. tropicalis
Xenbase 9.2 rna3654 X. laevis.L
Xenbase 9.2 rna81157 X. laevis.S
Xenbase 9.1 rna24410 X. tropicalis
JGI 9.1 Xelaev18015990m X. laevis.S
JGI 9.1 Xelaev18013523m X. laevis.L
ENSEMBL 9.1 ENSXETT00000023334 X. tropicalis
ENSEMBL 9.1 ENSXETT00000103555 X. tropicalis
ENSEMBL 9.1 ENSXETT00000084348 X. tropicalis
ENSEMBL 9.1 ENSXETT00000043834 X. tropicalis
JGI 7.1 Xetro.B01457.9 X. tropicalis
JGI 7.1 Xetro.B01457.10 X. tropicalis
JGI 7.1 Xetro.B01457.11 X. tropicalis
JGI 7.1 Xetro.B01457.12 X. tropicalis
JGI 7.1 Xetro.B01457.13 X. tropicalis
JGI 7.1 Xetro.B01457.14 X. tropicalis
JGI 7.1 Xetro.B01457.15 X. tropicalis
JGI 7.1 Xetro.B01457.16 X. tropicalis
JGI 7.1 Xetro.B01457.17 X. tropicalis
JGI 7.1 Xetro.B01457.18 X. tropicalis
JGI 7.1 Xetro.B01457.19 X. tropicalis
JGI 7.1 Xetro.B01457.20 X. tropicalis
JGI 7.1 Xetro.B01457.3 X. tropicalis
JGI 7.1 Xetro.B01457.4 X. tropicalis
JGI 7.1 Xetro.B01457.5 X. tropicalis
JGI 7.1 Xetro.B01457.6 X. tropicalis
JGI 7.1 Xetro.B01457.7 X. tropicalis
JGI 7.1 Xetro.B01457.8 X. tropicalis
JGI 7.1 Xetro.B01457.1 X. tropicalis
JGI 6.0 XeXenL6RMv10054064m X. laevis.L
JGI 6.0 XeXenL6RMv10019283m X. laevis.L
JGI 6.0 XeXenL6RMv10044079m X. laevis.S
JGI 4.1 e_gw1.161.52.1 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_1610003 X. tropicalis
JGI 4.1 estExt_fgenesh1_pm.C_1610001 X. tropicalis
JGI 4.1 estExt_Genewise1.C_1610052 X. tropicalis
JGI 4.1 estExt_Genewise1.C_1610072 X. tropicalis
JGI 4.1 ENSXETT00000023334 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_161000003 X. tropicalis
JGI 4.1 fgenesh1_pm.C_scaffold_161000001 X. tropicalis
JGI 4.1 gw1.161.52.1 X. tropicalis
JGI 4.1 gw1.161.72.1 X. tropicalis
JGI 4.1 gw1.161.73.1 X. tropicalis
JGI 4.1 estExt_Genewise1.C_1610073 X. tropicalis
JGI 4.1 e_gw1.161.73.1 X. tropicalis
JGI 4.1 e_gw1.161.72.1 X. tropicalis

mRNAs from cDNA libraries (12)

Clone Accession Species Library Anatomy Stage
IMAGE:5379195 BC063191 X. tropicalis NICHD_XGC_Emb7 whole organism NF stage 20 to NF stage 27
NM_203889 X. tropicalis
XM_012956661 X. tropicalis
XM_012956663 X. tropicalis
IMAGE:4202602 BC111515 X. laevis.L NICHD_XGC_Emb4 whole organism NF stage 31 to NF stage 32
M63595 X. laevis.L
IMAGE:4930289 BC044962 X. laevis.S NICHD_XGC_Emb4 whole organism NF stage 31 to NF stage 32
XM_018244858 X. laevis.L
NM_001087789 X. laevis.L
M63596 X. laevis.S
NM_001087791 X. laevis.S
IMAGE:5572472 BC048221 X. laevis.L NICHD_XGC_Emb4 whole organism NF stage 31 to NF stage 32

ESTs (389)

100 ESTs displayed. View all

Clone Accession 5'/3' Species Library Anatomy Stage
IMAGE:8872016 EL699299 5' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
IMAGE:5379195 BQ522801 5' X. tropicalis NICHD_XGC_Emb7 whole organism NF stage 20 to NF stage 27
IMAGE:5379631 BQ523531 5' X. tropicalis NICHD_XGC_Emb7 whole organism NF stage 20 to NF stage 27
IMAGE:5381663 BQ527394 5' X. tropicalis NICHD_XGC_Emb8 whole organism NF stage 40 to NF stage 45
IMAGE:6984838 CF151714 5' X. tropicalis NICHD_XGC_Emb8 whole organism NF stage 40 to NF stage 45
IMAGE:6983712 CF152705 5' X. tropicalis NICHD_XGC_Emb8 whole organism NF stage 40 to NF stage 45
IMAGE:6985137 CF153076 5' X. tropicalis NICHD_XGC_Emb8 whole organism NF stage 40 to NF stage 45
IMAGE:6983996 CF153172 5' X. tropicalis NICHD_XGC_Emb8 whole organism NF stage 40 to NF stage 45
st16i22 DC167554 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
st40n21 DC176937 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
st51c10 DC179301 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
st105p23 DC191982 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
st106p23 DC193000 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
IMAGE:7516490 CX747843 5' X. tropicalis NIH_XGC_tropNeu5 whole organism NF stage 14 to NF stage 18
IMAGE:6993450 CF238331 5' X. tropicalis NICHD_XGC_Emb6 whole organism NF stage 14 to NF stage 19
IMAGE:7092743 CK655943 5' X. tropicalis XtSt10-30 whole organism NF stage 10 to NF stage 29 and 30
TTbA003h20 CR410636 5' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
TTbA018b18 CR417441 5' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
TTbA075e06 CR424603 5' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
TTbA033l23 CR426548 5' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
TTbA020g18 CR427892 5' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
TTbA019g18 CR430578 5' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
TTbA022k20 CR436800 5' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
TTbA055l24 CR438366 5' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
TTbA011k18 CR448233 5' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
THdA002k07 CR560621 5' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
THdA043c05 CR575548 5' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
THdA044e02 CR583604 5' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
THdA022d16 CR586764 5' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
THdA044d22 CR587419 5' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
TTpA014f22 BX710981 5' X. tropicalis XGC-tadpole whole organism NF stage 35 and 36 to NF stage 40
TTpA001c15 BX711310 5' X. tropicalis XGC-tadpole whole organism NF stage 35 and 36 to NF stage 40
TTpA013p06 BX712703 5' X. tropicalis XGC-tadpole whole organism NF stage 35 and 36 to NF stage 40
TTpA023k12 BX715084 5' X. tropicalis XGC-tadpole whole organism NF stage 35 and 36 to NF stage 40
TTpA016a14 BX715410 5' X. tropicalis XGC-tadpole whole organism NF stage 35 and 36 to NF stage 40
TTpA034g12 BX715826 5' X. tropicalis XGC-tadpole whole organism NF stage 35 and 36 to NF stage 40
TTpA069b10 BX717413 5' X. tropicalis XGC-tadpole whole organism NF stage 35 and 36 to NF stage 40
TTpA036b22 BX728731 5' X. tropicalis XGC-tadpole whole organism NF stage 35 and 36 to NF stage 40
TTpA078n10 BX729150 5' X. tropicalis XGC-tadpole whole organism NF stage 35 and 36 to NF stage 40
TTpA066c12 BX737706 5' X. tropicalis XGC-tadpole whole organism NF stage 35 and 36 to NF stage 40
XZT10816 CX310687 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
XZT11793 CX312206 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7587259 CX312982 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7587336 CX313434 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7587447 CX313515 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7585551 CX318432 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7585530 CX318609 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7586029 CX319039 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7586377 CX319675 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
XZT13109 CX321255 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
XZT13311 CX321581 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
XZT13858 CX322449 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7592511 CX326202 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7593075 CX326559 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7786989 CX328575 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7786670 CX328975 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7594974 CX332117 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7788559 CX333833 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7788588 CX334287 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7595502 CX335692 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7595852 CX336338 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7634730 CX338387 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7620703 CX340807 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7620735 CX340980 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7599533 CX343716 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7618987 CX346109 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7619148 CX346520 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7619152 CX346546 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7619366 CX346896 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
XZT152 CX358641 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
XZT1275 CX360380 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7617917 CX362205 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7617745 CX362317 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7600662 CX363683 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7607451 CX367832 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7607314 CX368131 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7630005 CX370013 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7630201 CX370042 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7630638 CX370640 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7630568 CX370783 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7623102 CX372509 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7623501 CX372890 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7633295 CX374404 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7633743 CX375031 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7609999 CX376544 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7611195 CX377996 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7611371 CX378170 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7628530 CX382767 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7638786 CX384256 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7639431 CX384905 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7613434 CX388825 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7613669 CX389071 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7613998 CX389873 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7614264 CX390570 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7614617 CX390675 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7614829 CX390810 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7615023 CX391371 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7615712 CX392026 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7602538 CX393717 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41