Click here to close Hello! We notice that you are using Internet Explorer, which is not supported by Xenbase and may cause the site to display incorrectly. We suggest using a current version of Chrome, FireFox, or Safari.

Summary Expression Phenotypes Gene Literature (23) GO Terms (73) Nucleotides (1687) Proteins (53) Interactants (461) Wiki
XB-GENEPAGE-6258378

Show:     All X. tropicalis X. laevis

Nucleotide sequences for col1a1 - All

RefSeq mRNAs(3)
Models - Gene (27)
Models - mRNA (38)
mRNAs (6)
ESTs (1411)

RefSeq mRNAs (3)

Accession Version Protein Name Length Protein Species
NM_001011005 NM_001011005.1 collagen alpha-1(I) chain precursor 5711 bp NP_001011005 X. tropicalis
NM_001087352 NM_001087352.2 collagen, type I, alpha 1 S homeolog precursor 5717 bp NP_001080821 X. laevis.S
XM_018234828 XM_018234828.2 collagen alpha-1(I) chain 5750 bp XP_018090317 X. laevis.L

Models - Gene (27)

Source Version Model Species
NCBI 10.1 XBXL10_1g39164 X. laevis.L
NCBI 10.1 XBXL10_1g42393 X. laevis.S
NCBI 10.0 XBXT10g006926 X. tropicalis
ENSEMBL 10.0 col1a1 X. tropicalis
Xenbase 9.2 gene5072 X. laevis.L
Xenbase 9.2 gene44735 X. laevis.S
JGI 9.1 Xelaev18043299m.g X. laevis.L
JGI 9.1 Xelaev18046056m.g X. laevis.S
Xenbase 9.1 gene4615 X. tropicalis
ENSEMBL 9.1 col1a1 X. tropicalis
JGI 8.0 Xetrov14041017m.g X. tropicalis
JGI 7.1 Xetro.J00470 X. tropicalis
JGI 6.0 XeXenL6RMv10000231m.g X. laevis.S
JGI 4.1 fgenesh1_pm.C_scaffold_155000015 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_155000045 X. tropicalis
JGI 4.1 gw1.155.188.1 X. tropicalis
JGI 4.1 gw1.155.189.1 X. tropicalis
JGI 4.1 gw1.155.190.1 X. tropicalis
JGI 4.1 e_gw1.155.188.1 X. tropicalis
JGI 4.1 e_gw1.155.189.1 X. tropicalis
JGI 4.1 e_gw1.155.190.1 X. tropicalis
JGI 4.1 estExt_Genewise1.C_1550186 X. tropicalis
JGI 4.1 estExt_Genewise1.C_1550187 X. tropicalis
JGI 4.1 estExt_Genewise1.C_1550188 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_1550044 X. tropicalis
JGI 4.1 estExt_fgenesh1_pm.C_1550014 X. tropicalis
ENSEMBL 4.1 ENSXETG00000003374 X. tropicalis

mRNAs based on gene models(38)

Source Version Model Species
NCBI 10.1 XBmRNA79662 X. laevis.S
NCBI 10.1 XBmRNA73839 X. laevis.L
ENSEMBL 10.0 ENSXETT00000092252 X. tropicalis
ENSEMBL 10.0 ENSXETT00000070994 X. tropicalis
ENSEMBL 10.0 ENSXETT00000007330 X. tropicalis
ENSEMBL 10.0 ENSXETT00000076901 X. tropicalis
NCBI 10.0 mRNA034257 X. tropicalis
Xenbase 9.2 rna14814 X. laevis.L
Xenbase 9.2 rna88765 X. laevis.S
JGI 9.1 Xelaev18043299m X. laevis.L
JGI 9.1 Xelaev18046056m X. laevis.S
ENSEMBL 9.1 ENSXETT00000007330 X. tropicalis
ENSEMBL 9.1 ENSXETT00000070994 X. tropicalis
ENSEMBL 9.1 ENSXETT00000076901 X. tropicalis
ENSEMBL 9.1 ENSXETT00000087046 X. tropicalis
ENSEMBL 9.1 ENSXETT00000092252 X. tropicalis
Xenbase 9.1 rna15024 X. tropicalis
JGI 8.0 Xetrov14041017m X. tropicalis
JGI 7.1 Xetro.J00470.4 X. tropicalis
JGI 7.1 Xetro.J00470.5 X. tropicalis
JGI 7.1 Xetro.J00470.3 X. tropicalis
JGI 7.1 Xetro.J00470.1 X. tropicalis
JGI 7.1 Xetro.J00470.2 X. tropicalis
JGI 6.0 XeXenL6RMv10000231m X. laevis.S
JGI 4.1 gw1.155.188.1 X. tropicalis
JGI 4.1 gw1.155.189.1 X. tropicalis
JGI 4.1 gw1.155.190.1 X. tropicalis
JGI 4.1 e_gw1.155.190.1 X. tropicalis
JGI 4.1 e_gw1.155.189.1 X. tropicalis
JGI 4.1 ENSXETT00000007330 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_1550044 X. tropicalis
JGI 4.1 e_gw1.155.188.1 X. tropicalis
JGI 4.1 estExt_fgenesh1_pm.C_1550014 X. tropicalis
JGI 4.1 estExt_Genewise1.C_1550186 X. tropicalis
JGI 4.1 estExt_Genewise1.C_1550187 X. tropicalis
JGI 4.1 estExt_Genewise1.C_1550188 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_155000045 X. tropicalis
JGI 4.1 fgenesh1_pm.C_scaffold_155000015 X. tropicalis

mRNAs from cDNA libraries (6)

Clone Accession Species Library Anatomy Stage
IMAGE:6999644 BC082718 X. tropicalis NICHD_XGC_Swb1 whole organism frog
NM_001011005 X. tropicalis
AB034701 X. laevis.S
IMAGE:5572094 BC049829 X. laevis.S NICHD_XGC_Emb4 whole organism NF stage 31 to NF stage 32
NM_001087352 X. laevis.S
XM_018234828 X. laevis.L

ESTs (1411)

100 ESTs displayed. View all

Clone Accession 5'/3' Species Library Anatomy Stage
IMAGE:8868101 EL707219 5' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
IMAGE:8868085 EL707099 5' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
IMAGE:8867786 EL707012 5' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
IMAGE:8867498 EL707005 5' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
IMAGE:8867686 EL706980 5' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
IMAGE:8867440 EL706926 5' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
IMAGE:8867676 EL706903 5' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
IMAGE:8867674 EL706895 5' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
IMAGE:8867528 EL706875 5' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
IMAGE:8867520 EL706813 5' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
IMAGE:8867456 EL706692 5' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
IMAGE:8867525 EL706512 5' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
IMAGE:8867619 EL706502 5' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
IMAGE:8867749 EL706404 5' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
IMAGE:8867549 EL706346 5' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
IMAGE:8867062 EL706285 5' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
IMAGE:8867238 EL706166 5' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
IMAGE:8867090 EL706131 5' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
IMAGE:8867180 EL706087 5' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
IMAGE:8867224 EL706064 5' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
IMAGE:8867399 EL705947 5' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
IMAGE:8867383 EL705838 5' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
IMAGE:8867091 EL705796 5' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
IMAGE:8867231 EL705772 5' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
IMAGE:8867073 EL705661 5' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
IMAGE:8867359 EL705657 5' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
IMAGE:8867167 EL705647 5' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
IMAGE:8866672 EL705533 5' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
IMAGE:8866716 EL705501 5' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
IMAGE:8866996 EL705453 5' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
IMAGE:8862955 EL705451 5' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
IMAGE:8866942 EL705398 5' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
IMAGE:8866744 EL705348 5' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
IMAGE:8866976 EL705295 5' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
IMAGE:8862953 EL705293 5' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
IMAGE:8866736 EL705283 5' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
IMAGE:8862999 EL705162 5' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
IMAGE:8867005 EL705158 5' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
IMAGE:8866807 EL705109 5' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
IMAGE:8866701 EL705036 5' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
IMAGE:8866795 EL705025 5' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
IMAGE:8866747 EL705023 5' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
IMAGE:8866885 EL704988 5' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
IMAGE:8866735 EL704931 5' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
IMAGE:8866639 EL704927 5' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
IMAGE:8866875 EL704905 5' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
IMAGE:8866524 EL704794 5' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
IMAGE:8866330 EL704775 5' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
IMAGE:8866560 EL704711 5' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
IMAGE:8866360 EL704646 5' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
IMAGE:8866393 EL704545 5' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
IMAGE:8866471 EL704416 5' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
IMAGE:8866271 EL704355 5' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
IMAGE:8866202 EL704205 5' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
IMAGE:8866197 EL703843 5' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
IMAGE:8866101 EL703839 5' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
IMAGE:8866013 EL703562 5' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
IMAGE:8865572 EL703502 5' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
IMAGE:8865666 EL703491 5' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
IMAGE:8865520 EL703475 5' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
IMAGE:8865704 EL703425 5' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
IMAGE:8865832 EL703327 5' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
IMAGE:8865580 EL703242 5' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
IMAGE:8865567 EL703167 5' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
IMAGE:8865659 EL703145 5' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
IMAGE:8865657 EL703133 5' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
IMAGE:8865827 EL702998 5' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
IMAGE:8865723 EL702941 5' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
IMAGE:8865194 EL702921 5' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
IMAGE:8865240 EL702910 5' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
IMAGE:8865326 EL702846 5' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
IMAGE:8865278 EL702844 5' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
IMAGE:8865170 EL702755 5' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
IMAGE:8865210 EL702700 5' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
IMAGE:8865208 EL702684 5' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
IMAGE:8865246 EL702616 5' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
IMAGE:8865177 EL702466 5' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
IMAGE:8865463 EL702464 5' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
IMAGE:8865459 EL702433 5' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
IMAGE:8865407 EL702409 5' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
IMAGE:8865213 EL702395 5' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
IMAGE:8865115 EL702379 5' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
IMAGE:8865159 EL702352 5' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
IMAGE:8865245 EL702282 5' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
IMAGE:8865092 EL702230 5' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
IMAGE:8864948 EL702224 5' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
IMAGE:8864754 EL702205 5' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
IMAGE:8864896 EL702197 5' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
IMAGE:8864942 EL702184 5' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
IMAGE:8865070 EL702095 5' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
IMAGE:8864753 EL701895 5' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
IMAGE:8865039 EL701891 5' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
IMAGE:8864985 EL701850 5' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
IMAGE:8864779 EL701755 5' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
IMAGE:8864777 EL701744 5' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
IMAGE:8865063 EL701741 5' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
IMAGE:8864863 EL701679 5' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
IMAGE:8864955 EL701653 5' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
IMAGE:8864811 EL701649 5' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66