Click here to close Hello! We notice that you are using Internet Explorer, which is not supported by Xenbase and may cause the site to display incorrectly. We suggest using a current version of Chrome, FireFox, or Safari.

Summary Expression Phenotypes Gene Literature (25) GO Terms (10) Nucleotides (52) Proteins (29) Interactants (363) Wiki
XB-GENEPAGE-6485520

Show:     All X. tropicalis X. laevis

Nucleotide sequences for bix1.3 - All

RefSeq mRNAs(4)
Models - Gene (11)
Models - mRNA (11)
mRNAs (11)
ESTs (8)

RefSeq mRNAs (4)

Accession Version Protein Name Length Protein Species
NM_001088365 NM_001088365.1 Brachyury-inducible homeobox 1, gene 3 S homeolog 1461 bp NP_001081834 X. laevis.S
XM_018264260 XM_018264260.2 brachyury-inducible homeobox 1, gene 3 S homeolog isoform X1 1495 bp XP_018119749 X. laevis.S
NM_001088363 NM_001088363.1 Brachyury-inducible homeobox 1, gene 3 L homeolog 1504 bp NP_001081832 X. laevis.L
XM_018261718 XM_018261718.2 brachyury-inducible homeobox 1, gene 3 L homeolog isoform X1 1634 bp XP_018117207 X. laevis.L

Models - Gene (11)

Source Version Model Species
NCBI 10.1 XBXL10_1g24924 X. laevis.S
NCBI 10.1 XBXL10_1g22691 X. laevis.L
Xenbase 9.2 gene12508 X. laevis.S
Xenbase 9.2 gene12081 X. laevis.L
JGI 9.1 Xelaev18028631m.g X. laevis.S
JGI 9.1 Xelaev18026293m.g X. laevis.L
JGI 7.2 Xelaev16000631m.g X. laevis.L
JGI 7.2 Xelaev16037145m.g X. laevis.S
JGI 6.0 XeXenL6RMv10006255m.g X. laevis.L
JGI 6.0 XeXenL6RMv10006254m.g X. laevis.L
JGI 6.0 XeXenL6RMv10039490m.g X. laevis.S

mRNAs based on gene models(11)

Source Version Model Species
NCBI 10.1 XBmRNA46492 X. laevis.S
NCBI 10.1 XBmRNA42288 X. laevis.L
Xenbase 9.2 rna35094 X. laevis.L
Xenbase 9.2 rna36379 X. laevis.S
JGI 9.1 Xelaev18026293m X. laevis.L
JGI 9.1 Xelaev18028631m X. laevis.S
JGI 7.2 Xelaev16037145m X. laevis.S
JGI 7.2 Xelaev16000631m X. laevis.L
JGI 6.0 XeXenL6RMv10039490m X. laevis.S
JGI 6.0 XeXenL6RMv10006255m X. laevis.L
JGI 6.0 XeXenL6RMv10006254m X. laevis.L

mRNAs from cDNA libraries (11)

Clone Accession Species Library Anatomy Stage
AF079562 X. laevis.S
IMAGE:9041553 BC169919 X. laevis.S
NM_001088365 X. laevis.S
XM_018264260 X. laevis.S
AF079559 X. laevis.L
AF081351 X. laevis.L
IMAGE:6862941 BC157494 X. laevis.L NICHD_XGC_Emb1 whole organism NF stage 10
IMAGE:9041639 BC170004 X. laevis.L
IMAGE:9041641 BC170006 X. laevis.L
NM_001088363 X. laevis.L
XM_018261718 X. laevis.L

ESTs (8)

Clone Accession 5'/3' Species Library Anatomy Stage
xl305j19 DC124746 5' X. laevis.S Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
IMAGE:7297511 CO389507 5' X. laevis.L Blumberg_Cho dorsal blastopore lip upper blastopore lip NF stage 7 to NF stage 9
IMAGE:6862941 CB209516 5' X. laevis.L NICHD_XGC_Emb1 whole organism NF stage 10
IMAGE:4083507 BG017712 5' X. laevis.S Cho Li treated gastrula whole organism NF stage 10 to NF stage 12.5
IMAGE:7300442 CO382646 5' X. laevis.S Blumberg_Cho dorsal blastopore lip upper blastopore lip NF stage 7 to NF stage 9
IMAGE:7297511 CO389556 3' X. laevis.L Blumberg_Cho dorsal blastopore lip upper blastopore lip NF stage 7 to NF stage 9
IMAGE:4083507 BG022838 3' X. laevis.S Cho Li treated gastrula whole organism NF stage 10 to NF stage 12.5
rxl305j19 DC089825 3' X. laevis.S Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15