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Summary Expression Phenotypes Gene Literature (37) GO Terms (19) Nucleotides (99) Proteins (42) Interactants (273) Wiki
XB-GENEPAGE-853165

Show:     All X. tropicalis X. laevis

Nucleotide sequences for vsx1 - All

RefSeq mRNAs(4)
Models - Gene (28)
Models - mRNA (28)
mRNAs (7)
ESTs (27)

RefSeq mRNAs (4)

Accession Version Protein Name Length Protein Species
NM_001100200 NM_001100200.1 visual system homeobox 1 2295 bp NP_001093670 X. tropicalis
XM_012962573 XM_012962573.3 visual system homeobox 1 isoform X1 2431 bp XP_012818027 X. tropicalis
NM_001096722 NM_001096722.1 visual system homeobox 1 1035 bp NP_001090191 X. laevis.L
XM_018265130 XM_018265130.2 visual system homeobox 1-like 2249 bp XP_018120619 X. laevis.S

Models - Gene (28)

Source Version Model Species
NCBI 10.1 XBXL10_1g22945 X. laevis.L
NCBI 10.1 XBXL10_1g25132 X. laevis.S
NCBI 10.0 XBXT10g003472 X. tropicalis
ENSEMBL 10.0 vsx1 X. tropicalis
Xenbase 9.2 gene44538 X. laevis.S
Xenbase 9.2 gene37486 X. laevis.L
JGI 9.1 Xelaev18028887m.g X. laevis.S
JGI 9.1 Xelaev18026576m.g X. laevis.L
Xenbase 9.1 gene4500 X. tropicalis
ENSEMBL 9.1 vsx1 X. tropicalis
JGI 8.0 Xetrov14023717m.g X. tropicalis
JGI 7.2 Xelaev16005192m.g X. laevis.L
JGI 7.1 Xetro.E01200 X. tropicalis
JGI 6.0 XeXenL6RMv10010553m.g X. laevis.L
ENSEMBL 4.1 ENSXETG00000012786 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_292000030 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_292000029 X. tropicalis
JGI 4.1 fgenesh1_kg.C_scaffold_292000008 X. tropicalis
JGI 4.1 estExt_fgenesh1_pm.C_2920005 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_2920030 X. tropicalis
JGI 4.1 fgenesh_pm_kg.C_scaffold_292000006 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_2920029 X. tropicalis
JGI 4.1 estExt_fgenesh1_kg.C_2920008 X. tropicalis
JGI 4.1 estExt_Genewise1.C_2920021 X. tropicalis
JGI 4.1 estExt_FilteredModels1.C_2920014 X. tropicalis
JGI 4.1 gw1.292.21.1 X. tropicalis
JGI 4.1 e_gw1.292.21.1 X. tropicalis
JGI 4.1 fgenesh1_pm.C_scaffold_292000005 X. tropicalis

mRNAs based on gene models(28)

Source Version Model Species
NCBI 10.1 XBmRNA46916 X. laevis.S
NCBI 10.1 XBmRNA42760 X. laevis.L
ENSEMBL 10.0 ENSXETT00000027937 X. tropicalis
NCBI 10.0 mRNA017636 X. tropicalis
Xenbase 9.2 rna78226 X. laevis.L
Xenbase 9.2 rna88510 X. laevis.S
JGI 9.1 Xelaev18028887m X. laevis.S
Xenbase 9.1 rna14648 X. tropicalis
JGI 9.1 Xelaev18026576m X. laevis.L
ENSEMBL 9.1 ENSXETT00000027937 X. tropicalis
JGI 8.0 Xetrov14023717m X. tropicalis
JGI 7.2 Xelaev16005192m X. laevis.L
JGI 7.1 Xetro.E01200.1 X. tropicalis
JGI 6.0 XeXenL6RMv10010553m X. laevis.L
JGI 4.1 fgenesh_pm_kg.C_scaffold_292000006 X. tropicalis
ENSEMBL 4.1 ENSXETT00000027937 X. tropicalis
JGI 4.1 estExt_fgenesh1_kg.C_2920008 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_2920029 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_2920030 X. tropicalis
JGI 4.1 estExt_fgenesh1_pm.C_2920005 X. tropicalis
JGI 4.1 estExt_FilteredModels1.C_2920014 X. tropicalis
JGI 4.1 estExt_Genewise1.C_2920021 X. tropicalis
JGI 4.1 fgenesh1_kg.C_scaffold_292000008 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_292000029 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_292000030 X. tropicalis
JGI 4.1 fgenesh1_pm.C_scaffold_292000005 X. tropicalis
JGI 4.1 e_gw1.292.21.1 X. tropicalis
JGI 4.1 gw1.292.21.1 X. tropicalis

mRNAs from cDNA libraries (7)

Clone Accession Species Library Anatomy Stage
IMAGE:7614953 BC135613 X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
NM_001100200 X. tropicalis
XM_012962573 X. tropicalis
IMAGE:5572725 BC044049 X. laevis.L NICHD_XGC_Emb4 whole organism NF stage 31 to NF stage 32
DQ324366 X. laevis.L
NM_001096722 X. laevis.L
XM_018265130 X. laevis.S

ESTs (27)

Clone Accession 5'/3' Species Library Anatomy Stage
xthr01B13 CN119448 5' X. tropicalis Xenopus tropicalis xthr plasmid library head NF stage 25 to NF stage 35 and 36
TTpA006n21 BX712896 5' X. tropicalis XGC-tadpole whole organism NF stage 35 and 36 to NF stage 40
IMAGE:7587939 CX314207 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7610594 CX377365 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7614953 CX390686 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7615080 CX391681 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7592547 DR890322 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
xthr21O01 CN103417 5' X. tropicalis Xenopus tropicalis xthr plasmid library head NF stage 25 to NF stage 35 and 36
xthr42A01 CN114970 5' X. tropicalis Xenopus tropicalis xthr plasmid library head NF stage 25 to NF stage 35 and 36
IMAGE:8888026 EL846270 5' X. tropicalis NICHD_XGC_trop_25 whole organism NF stage 25
THdA049l21 CR585233 5' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
TTbA032e07 CR443195 5' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
IMAGE:8888026 EL846271 3' X. tropicalis NICHD_XGC_trop_25 whole organism NF stage 25
TTbA032e07 CR443196 3' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
IMAGE:7615080 DR896630 3' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
xthr21O01 CN103416 3' X. tropicalis Xenopus tropicalis xthr plasmid library head NF stage 25 to NF stage 35 and 36
IMAGE:7592547 DR890321 3' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7587939 CX314206 3' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
xthr42A01 CN114969 3' X. tropicalis Xenopus tropicalis xthr plasmid library head NF stage 25 to NF stage 35 and 36
IMAGE:7610594 DR895555 3' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7614953 CX390685 3' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
127C17A BG354629 5' X. laevis.L Harland stage 19-23 Xenopus laevis cDNA whole organism NF stage 19 to NF stage 23
IMAGE:5572725 BQ733200 5' X. laevis.L NICHD_XGC_Emb4 whole organism NF stage 31 to NF stage 32
XL051o09 BJ069139 5' X. laevis.L NIBB Mochii normalized Xenopus tailbud library whole organism NF stage 25
XL056l09 BJ070486 5' X. laevis.L NIBB Mochii normalized Xenopus tailbud library whole organism NF stage 25
XL051o09 BJ086055 3' X. laevis.L NIBB Mochii normalized Xenopus tailbud library whole organism NF stage 25
XL056l09 BJ087516 3' X. laevis.L NIBB Mochii normalized Xenopus tailbud library whole organism NF stage 25