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Summary Expression Phenotypes Gene Literature (0) GO Terms (3) Nucleotides (133) Proteins (45) Interactants (3) Wiki
XB-GENEPAGE-946265

Show:     All X. tropicalis X. laevis

Nucleotide sequences for pudp - All

RefSeq mRNAs(4)
Models - Gene (31)
Models - mRNA (32)
mRNAs (7)
ESTs (35)

RefSeq mRNAs (4)

Accession Version Protein Name Length Protein Species
NM_001011342 NM_001011342.1 pseudouridine-5'-phosphatase 1592 bp NP_001011342 X. tropicalis
XM_018091213 XM_018091213.2 pseudouridine-5'-phosphatase isoform X1 1646 bp XP_017946702 X. tropicalis
NM_001096330 NM_001096330.1 pseudouridine 5'-phosphatase L homeolog 791 bp NP_001089799 X. laevis.L
XM_018248509 XP_018103998.1 pseudouridine-5'-phosphatase-like 426 bp XP_018103998 X. laevis.S

Models - Gene (31)

Source Version Model Species
NCBI 10.1 XBXL10_1g6545 X. laevis.L
NCBI 10.0 XBXT10g011126 X. tropicalis
NCBI 10.1 XBXL10_1g8976 X. laevis.S
ENSEMBL 10.0 pudp X. tropicalis
Xenbase 9.2 gene13323 X. laevis.L
JGI 9.1 Xelaev18011742m.g X. laevis.L
Xenbase 9.1 gene19565 X. tropicalis
ENSEMBL 9.1 pudp X. tropicalis
JGI 8.0 Xetrov14006876m.g X. tropicalis
JGI 7.2 Xelaev16046324m.g X. laevis.L
JGI 7.1 Xetro.B00406 X. tropicalis
ENSEMBL 4.1 ENSXETG00000008168 X. tropicalis
JGI 4.1 gw1.430.31.1 X. tropicalis
JGI 4.1 fgenesh1_Sanger_cdna.C_scaffold_430000002 X. tropicalis
JGI 4.1 fgenesh1_kg.C_scaffold_430000002 X. tropicalis
JGI 4.1 fgenesh1_kg.C_scaffold_430000003 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_430000012 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_430000013 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_430000014 X. tropicalis
JGI 4.1 fgenesh1_Sanger_cdna.C_scaffold_430000003 X. tropicalis
JGI 4.1 e_gw1.430.1.1 X. tropicalis
JGI 4.1 e_gw1.430.11.1 X. tropicalis
JGI 4.1 e_gw1.430.14.1 X. tropicalis
JGI 4.1 e_gw1.430.15.1 X. tropicalis
JGI 4.1 e_gw1.430.18.1 X. tropicalis
JGI 4.1 e_gw1.430.31.1 X. tropicalis
JGI 4.1 gw1.430.1.1 X. tropicalis
JGI 4.1 gw1.430.11.1 X. tropicalis
JGI 4.1 gw1.430.14.1 X. tropicalis
JGI 4.1 gw1.430.15.1 X. tropicalis
JGI 4.1 gw1.430.18.1 X. tropicalis

mRNAs based on gene models(32)

Source Version Model Species
NCBI 10.1 XBmRNA16699 X. laevis.S
NCBI 10.1 XBmRNA12258 X. laevis.L
ENSEMBL 10.0 ENSXETT00000017918 X. tropicalis
NCBI 10.0 mRNA055214 X. tropicalis
ENSEMBL 10.0 ENSXETT00000117053 X. tropicalis
Xenbase 9.2 rna38781 X. laevis.L
Xenbase 9.1 rna40830 X. tropicalis
JGI 9.1 Xelaev18011742m X. laevis.L
ENSEMBL 9.1 ENSXETT00000017918 X. tropicalis
JGI 8.0 Xetrov14006876m X. tropicalis
JGI 7.2 Xelaev16046324m X. laevis.L
JGI 7.1 Xetro.B00406.1 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_430000014 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_430000013 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_430000012 X. tropicalis
JGI 4.1 fgenesh1_kg.C_scaffold_430000003 X. tropicalis
JGI 4.1 fgenesh1_kg.C_scaffold_430000002 X. tropicalis
JGI 4.1 e_gw1.430.31.1 X. tropicalis
JGI 4.1 e_gw1.430.18.1 X. tropicalis
JGI 4.1 e_gw1.430.15.1 X. tropicalis
JGI 4.1 e_gw1.430.14.1 X. tropicalis
JGI 4.1 e_gw1.430.11.1 X. tropicalis
JGI 4.1 e_gw1.430.1.1 X. tropicalis
ENSEMBL 4.1 ENSXETT00000017918 X. tropicalis
JGI 4.1 gw1.430.15.1 X. tropicalis
JGI 4.1 gw1.430.18.1 X. tropicalis
JGI 4.1 gw1.430.31.1 X. tropicalis
JGI 4.1 gw1.430.14.1 X. tropicalis
JGI 4.1 gw1.430.1.1 X. tropicalis
JGI 4.1 gw1.430.11.1 X. tropicalis
JGI 4.1 fgenesh1_Sanger_cdna.C_scaffold_430000003 X. tropicalis
JGI 4.1 fgenesh1_Sanger_cdna.C_scaffold_430000002 X. tropicalis

mRNAs from cDNA libraries (7)

Clone Accession Species Library Anatomy Stage
IMAGE:5384835 BC088493 X. tropicalis NICHD_XGC_Emb5 whole organism NF stage 10 to NF stage 13
TEgg040f11 CR760575 X. tropicalis
NM_001011342 X. tropicalis
XM_018091213 X. tropicalis
IMAGE:7766639 BC106588 X. laevis.L
NM_001096330 X. laevis.L
XM_018248509 X. laevis.S

ESTs (35)

Clone Accession 5'/3' Species Library Anatomy Stage
xthr30K10 CN107554 5' X. tropicalis Xenopus tropicalis xthr plasmid library head NF stage 25 to NF stage 35 and 36
IMAGE:5384835 BQ393006 5' X. tropicalis NICHD_XGC_Emb5 whole organism NF stage 10 to NF stage 13
TGas016p02 AL633594 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas049k23 AL649425 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas031p23 AL649766 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas067m04 AL682424 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas105e02 AL956557 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
IMAGE:7525104 CX439858 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7538025 CX447094 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7541141 CX462630 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7552350 CX494521 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7547161 CX500961 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
TNeu050f13 AL662305 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu139m22 AL789927 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu102l04 AL803281 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TTbA009k17 CR411444 5' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
TTbA046o16 CR423798 5' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
IMAGE:7637536 CX407535 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7664507 CX848712 5' X. tropicalis NIH_XGC_tropBrn4 brain frog
IMAGE:7805483 DR841843 5' X. tropicalis NIH_XGC_tropFat1 fat body frog
IMAGE:8963918 EL659088 5' X. tropicalis NICHD_XGC_tropInt_66 intestine unspecified stage
TGas067m04 BX748367 3' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas105e02 BX756853 3' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TTbA009k17 CR411445 3' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
IMAGE:7664507 CX848711 3' X. tropicalis NIH_XGC_tropBrn4 brain frog
IMAGE:7637536 CX407534 3' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
TNeu102l04 BX694371 3' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
IMAGE:7538025 CX447093 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7552350 CX494520 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7547161 CX500960 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
xthr30K10 CN107553 3' X. tropicalis Xenopus tropicalis xthr plasmid library head NF stage 25 to NF stage 35 and 36
IMAGE:3200616 AW765561 5' X. laevis.L Harland stage 19-23 whole organism NF stage 19 to NF stage 23
IMAGp998B0710199 BX852131 5' X. laevis.L Wellcome CRC pcDNAI St24-26 whole organism NF stage 24 to NF stage 26
IMAGp998E017824 BX846863 5' X. laevis.L Harland stage 19-23 whole organism NF stage 19 to NF stage 23
IMAGE:3200616 AW766339 3' X. laevis.L Harland stage 19-23 whole organism NF stage 19 to NF stage 23