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Summary Expression Phenotypes Gene Literature (0) GO Terms (15) Nucleotides (224) Proteins (76) Interactants (10) Wiki
XB-GENEPAGE-971095

Show:     All X. tropicalis X. laevis

Nucleotide sequences for pcif1 - All

RefSeq mRNAs(6)
Models - Gene (35)
Models - mRNA (43)
mRNAs (9)
ESTs (77)

RefSeq mRNAs (6)

Accession Version Protein Name Length Protein Species
NM_001017341 NM_001017341.2 mRNA (2'-O-methyladenosine-N(6)-)-methyltransferase 3171 bp NP_001017341 X. tropicalis
XM_012971801 XM_012971801.2 mRNA (2'-O-methyladenosine-N(6)-)-methyltransferase isoform X1 3393 bp XP_012827255 X. tropicalis
XM_012971802 XM_012971802.2 mRNA (2'-O-methyladenosine-N(6)-)-methyltransferase isoform X1 3334 bp XP_012827256 X. tropicalis
NM_001095735 NM_001095735.1 phosphorylated CTD interacting factor 1 S homeolog 3316 bp NP_001089204 X. laevis.S
XM_018235181 XM_018235181.2 mRNA (2'-O-methyladenosine-N(6)-)-methyltransferase 3774 bp XP_018090670 X. laevis.L
XM_018235182 XM_018235182.2 mRNA (2'-O-methyladenosine-N(6)-)-methyltransferase 3716 bp XP_018090671 X. laevis.L

Models - Gene (35)

Source Version Model Species
NCBI 10.1 XBXL10_1g39844 X. laevis.L
NCBI 10.1 XBXL10_1g42878 X. laevis.S
NCBI 10.0 XBXT10g006140 X. tropicalis
ENSEMBL 10.0 pcif1 X. tropicalis
Xenbase 9.2 gene2887 X. laevis.L
Xenbase 9.2 gene6523 X. laevis.S
JGI 9.1 Xelaev18043874m.g X. laevis.L
JGI 9.1 Xelaev18046540m.g X. laevis.S
Xenbase 9.1 gene2831 X. tropicalis
ENSEMBL 9.1 pcif1 X. tropicalis
JGI 8.0 Xetrov14040869m.g X. tropicalis
JGI 7.2 Xelaev16074329m.g X. laevis.S
JGI 7.1 Xetro.J00657 X. tropicalis
JGI 6.0 XeXenL6RMv10008226m.g X. laevis.S
JGI 6.0 XeXenL6RMv10007617m.g X. laevis.S
ENSEMBL 4.1 ENSXETG00000014866 X. tropicalis
JGI 4.1 estExt_fgenesh1_kg.C_290018 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_29000103 X. tropicalis
JGI 4.1 fgenesh1_pm.C_scaffold_29000025 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_29000102 X. tropicalis
JGI 4.1 e_gw1.29.311.1 X. tropicalis
JGI 4.1 e_gw1.29.421.1 X. tropicalis
JGI 4.1 e_gw1.29.50.1 X. tropicalis
JGI 4.1 gw1.29.311.1 X. tropicalis
JGI 4.1 gw1.29.421.1 X. tropicalis
JGI 4.1 gw1.29.50.1 X. tropicalis
JGI 4.1 estExt_FilteredModels1.C_290052 X. tropicalis
JGI 4.1 estExt_Genewise1.C_290050 X. tropicalis
JGI 4.1 estExt_Genewise1.C_290311 X. tropicalis
JGI 4.1 estExt_Genewise1.C_290421 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_290102 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_290103 X. tropicalis
JGI 4.1 estExt_fgenesh1_pm.C_290025 X. tropicalis
JGI 4.1 fgenesh1_Sanger_cdna.C_scaffold_29000011 X. tropicalis
JGI 4.1 fgenesh1_kg.C_scaffold_29000018 X. tropicalis

mRNAs based on gene models(43)

Source Version Model Species
NCBI 10.1 XBmRNA74961 X. laevis.L
NCBI 10.1 XBmRNA80588 X. laevis.S
ENSEMBL 10.0 ENSXETT00000032531 X. tropicalis
ENSEMBL 10.0 ENSXETT00000066818 X. tropicalis
NCBI 10.0 mRNA030337 X. tropicalis
ENSEMBL 10.0 ENSXETT00000104984 X. tropicalis
Xenbase 9.2 rna19077 X. laevis.S
Xenbase 9.2 rna8385 X. laevis.L
Xenbase 9.1 rna9316 X. tropicalis
JGI 9.1 Xelaev18043874m X. laevis.L
JGI 9.1 Xelaev18046540m X. laevis.S
ENSEMBL 9.1 ENSXETT00000104984 X. tropicalis
ENSEMBL 9.1 ENSXETT00000103012 X. tropicalis
ENSEMBL 9.1 ENSXETT00000102691 X. tropicalis
ENSEMBL 9.1 ENSXETT00000078682 X. tropicalis
ENSEMBL 9.1 ENSXETT00000066818 X. tropicalis
ENSEMBL 9.1 ENSXETT00000032531 X. tropicalis
JGI 8.0 Xetrov14040869m X. tropicalis
JGI 7.2 Xelaev16074329m X. laevis.S
JGI 7.1 Xetro.J00657.2 X. tropicalis
JGI 7.1 Xetro.J00657.1 X. tropicalis
JGI 6.0 XeXenL6RMv10008226m X. laevis.S
JGI 6.0 XeXenL6RMv10007617m X. laevis.S
JGI 4.1 e_gw1.29.421.1 X. tropicalis
JGI 4.1 e_gw1.29.311.1 X. tropicalis
ENSEMBL 4.1 ENSXETT00000032531 X. tropicalis
JGI 4.1 gw1.29.311.1 X. tropicalis
JGI 4.1 gw1.29.421.1 X. tropicalis
JGI 4.1 gw1.29.50.1 X. tropicalis
JGI 4.1 fgenesh1_Sanger_cdna.C_scaffold_29000011 X. tropicalis
JGI 4.1 fgenesh1_pm.C_scaffold_29000025 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_29000103 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_29000102 X. tropicalis
JGI 4.1 fgenesh1_kg.C_scaffold_29000018 X. tropicalis
JGI 4.1 estExt_Genewise1.C_290421 X. tropicalis
JGI 4.1 estExt_Genewise1.C_290311 X. tropicalis
JGI 4.1 estExt_FilteredModels1.C_290052 X. tropicalis
JGI 4.1 estExt_Genewise1.C_290050 X. tropicalis
JGI 4.1 estExt_fgenesh1_pm.C_290025 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_290103 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_290102 X. tropicalis
JGI 4.1 estExt_fgenesh1_kg.C_290018 X. tropicalis
JGI 4.1 e_gw1.29.50.1 X. tropicalis

mRNAs from cDNA libraries (9)

Clone Accession Species Library Anatomy Stage
IMAGE:7707925 BC121833 X. tropicalis NIH_XGC_tropTe5 testis frog
TEgg003n14 CR855540 X. tropicalis
NM_001017341 X. tropicalis
XM_012971801 X. tropicalis
XM_012971802 X. tropicalis
IMAGE:6867322 BC089119 X. laevis.S Wellcome CRC pSK egg egg unfertilized egg stage
NM_001095735 X. laevis.S
XM_018235181 X. laevis.L
XM_018235182 X. laevis.L

ESTs (77)

Clone Accession 5'/3' Species Library Anatomy Stage
IMAGE:7707925 CX961016 5' X. tropicalis NIH_XGC_tropTe5 testis frog
IMAGE:7633420 CX375085 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
CAAO8837 CX956695 5' X. tropicalis NIH_XGC_tropTe5 testis frog
XZT3837 CX399456 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7703236 CX939175 5' X. tropicalis NIH_XGC_tropTe5 testis frog
IMAGE:7584861 CX415772 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:9012857 EL858165 5' X. tropicalis NICHD_XGC_trop_25 whole organism NF stage 25
IMAGE:7688350 CX911511 5' X. tropicalis NIH_XGC_tropTe4 testis frog
st32g07 DC172626 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
IMAGE:7653549 CX821982 5' X. tropicalis NIH_XGC_tropBrn3 brain frog
st112n19 DC195371 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
IMAGE:7660477 CX840987 5' X. tropicalis NIH_XGC_tropBrn3 brain frog
IMAGE:7670930 CX878548 5' X. tropicalis NIH_XGC_tropBrn4 brain frog
IMAGE:8961136 EL654653 5' X. tropicalis NICHD_XGC_tropInt_63 intestine unspecified stage
IMAGE:5308213 BQ390008 5' X. tropicalis NICHD_XGC_Emb5 whole organism NF stage 10 to NF stage 13
IMAGE:7698149 CX929789 5' X. tropicalis NIH_XGC_tropTe5 testis frog
CAAN12041 CX928403 5' X. tropicalis NIH_XGC_tropTe4 testis frog
TGas004d17 AL595918 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas140n19 AL971816 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
IMAGE:8858528 EL822289 5' X. tropicalis NICHD_XGC_tropTe1 testis frog
IMAGE:8855400 EL817921 5' X. tropicalis NICHD_XGC_tropTe1 testis frog
IMAGE:7547385 CX500855 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7694713 CX922776 5' X. tropicalis NIH_XGC_tropTe4 testis frog
IMAGE:7694418 CX922358 5' X. tropicalis NIH_XGC_tropTe4 testis frog
IMAGE:7693552 CX920896 5' X. tropicalis NIH_XGC_tropTe4 testis frog
IMAGE:7691619 CX916909 5' X. tropicalis NIH_XGC_tropTe4 testis frog
TTbA011g02 CR448190 5' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
THdA013e21 CR563348 5' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
IMAGE:8955243 EL656317 5' X. tropicalis NICHD_XGC_tropInt_62 intestine frog
THdA031h18 CR585928 5' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
IMAGE:8934933 EL636202 5' X. tropicalis NICHD_XGC_tropBone1 bone tissue frog
IMAGE:7691278 CX916514 5' X. tropicalis NIH_XGC_tropTe4 testis frog
TTpA025a01 BX738901 5' X. tropicalis XGC-tadpole whole organism NF stage 35 and 36 to NF stage 40
IMAGE:8934933 EL636201 3' X. tropicalis NICHD_XGC_tropBone1 bone tissue frog
rst112n19 DC165297 3' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
IMAGE:5308213 BQ390007 3' X. tropicalis NICHD_XGC_Emb5 whole organism NF stage 10 to NF stage 13
TGas140n19 BX764638 3' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
IMAGE:7547385 CX500854 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
THdA013e21 CR563349 3' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
THdA031h18 CR585929 3' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
TTpA025a01 BX738902 3' X. tropicalis XGC-tadpole whole organism NF stage 35 and 36 to NF stage 40
XZT3837 CX399455 3' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7584861 CX415771 3' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7633420 DR901703 3' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7653549 CX821981 3' X. tropicalis NIH_XGC_tropBrn3 brain frog
IMAGE:7660477 CX840986 3' X. tropicalis NIH_XGC_tropBrn3 brain frog
IMAGE:7688350 CX911510 3' X. tropicalis NIH_XGC_tropTe4 testis frog
IMAGE:7691278 CX916513 3' X. tropicalis NIH_XGC_tropTe4 testis frog
IMAGE:7691619 CX916908 3' X. tropicalis NIH_XGC_tropTe4 testis frog
IMAGE:7693552 CX920895 3' X. tropicalis NIH_XGC_tropTe4 testis frog
IMAGE:7694418 CX922357 3' X. tropicalis NIH_XGC_tropTe4 testis frog
IMAGE:7694713 CX922775 3' X. tropicalis NIH_XGC_tropTe4 testis frog
IMAGE:7698149 CX929788 3' X. tropicalis NIH_XGC_tropTe5 testis frog
IMAGE:7703236 CX939174 3' X. tropicalis NIH_XGC_tropTe5 testis frog
CAAO8837 CX956694 3' X. tropicalis NIH_XGC_tropTe5 testis frog
IMAGE:7707925 CX961015 3' X. tropicalis NIH_XGC_tropTe5 testis frog
IMAGE:8855400 EL817922 3' X. tropicalis NICHD_XGC_tropTe1 testis frog
IMAGE:8858528 EL822290 3' X. tropicalis NICHD_XGC_tropTe1 testis frog
XL459h24ex BP689446 5' X. laevis.S Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL082j04 BJ065307 5' X. laevis.S NIBB Mochii normalized Xenopus tailbud library whole organism NF stage 25
XL176l12 BJ616400 5' X. laevis.S NIBB Mochii normalized Xenopus early gastrula library whole organism NF stage 10.5
PBX0006F05 AW633348 5' X. laevis.S Blackshear/Soares normalized Xenopus egg library egg unfertilized egg stage
IMAGE:6867322 CA982742 5' X. laevis.S Wellcome CRC pSK egg egg unfertilized egg stage
IMAGE:6324470 CA972622 5' X. laevis.S Wellcome CRC pSK egg egg unfertilized egg stage
IMAGE:4085551 BI449094 5' X. laevis.S Wellcome CRC pRN3 St13 17 egg animal cap whole organism NF stage 13 to NF stage 21
PBX0130G12 AW643618 5' X. laevis.S Blackshear/Soares normalized Xenopus egg library egg unfertilized egg stage
PBX0129C02 AW643480 5' X. laevis.S Blackshear/Soares normalized Xenopus egg library egg unfertilized egg stage
IMAGE:6326468 CA974002 5' X. laevis.S Wellcome CRC pSK egg egg unfertilized egg stage
IMAGp998K209023 BX852509 5' X. laevis.S Xenopus laevis oocyte oocyte NF stage 5 (16-cell) to NF stage 6 (32-cell)
IMAGE:8823250 EG574472 5' X. laevis.S NICHD_XGC_int_m whole organism NF stage 56 to NF stage 62
IMAGE:6326195 CA973817 5' X. laevis.S Wellcome CRC pSK egg egg unfertilized egg stage
IMAGE:4930681 BQ731394 5' X. laevis.S NICHD_XGC_Emb4 whole organism NF stage 31 to NF stage 32
IMAGE:8319216 DY554636 5' X. laevis.S NICHD_XGC_Emb10 whole organism NF stage 17 to NF stage 19
XL082j04 BJ082748 3' X. laevis.S NIBB Mochii normalized Xenopus tailbud library whole organism NF stage 25
XL459h24ex BP724203 3' X. laevis.S Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL176l12 BJ632968 3' X. laevis.S NIBB Mochii normalized Xenopus early gastrula library whole organism NF stage 10.5
IMAGE:3745291 BE678798 3' X. laevis.S Xenopus laevis oocyte non normalized oocyte NF stage 5 (16-cell) to NF stage 6 (32-cell)