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Summary Expression Phenotypes Gene Literature (2) GO Terms (9) Nucleotides (173) Proteins (50) Interactants (400) Wiki
XB-GENEPAGE-994257

Show:     All X. tropicalis X. laevis.L

Nucleotide sequences for upf3b - All

Models - Gene (29)
Models - mRNA (34)
mRNAs (5)
ESTs (67)

Models - Gene (29)

Source Version Model Species
NCBI 10.0 XBXT10g002353 X. tropicalis
NCBI 10.1 XBXL10_1g38057 X. laevis.S
NCBI 10.1 XBXL10_1g35201 X. laevis.L
ENSEMBL 10.0 upf3b X. tropicalis
JGI 9.1 Xelaev18042219m.g X. laevis.S
JGI 9.1 Xelaev18038888m.g X. laevis.L
Xenbase 9.1 gene3684 X. tropicalis
Xenbase 9.2 gene34441 X. laevis.S
Xenbase 9.2 gene15012 X. laevis.L
ENSEMBL 9.1 upf3b X. tropicalis
JGI 8.0 Xetrov14033413m.g X. tropicalis
JGI 7.1 Xetro.H00659 X. tropicalis
JGI 7.2 Xelaev16015742m.g X. laevis.S
JGI 6.0 XeXenL6RMv10025488m.g X. laevis.S
ENSEMBL 4.1 ENSXETG00000007440 X. tropicalis
JGI 4.1 e_gw1.593.40.1 X. tropicalis
JGI 4.1 estExt_FilteredModels1.C_5930006 X. tropicalis
JGI 4.1 e_gw1.593.16.1 X. tropicalis
JGI 4.1 e_gw1.593.42.1 X. tropicalis
JGI 4.1 gw1.593.16.1 X. tropicalis
JGI 4.1 gw1.593.40.1 X. tropicalis
JGI 4.1 gw1.593.42.1 X. tropicalis
JGI 4.1 estExt_Genewise1.C_5930016 X. tropicalis
JGI 4.1 estExt_Genewise1.C_5930040 X. tropicalis
JGI 4.1 estExt_Genewise1.C_5930042 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_5930008 X. tropicalis
JGI 4.1 estExt_fgenesh1_pm.C_5930003 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_593000008 X. tropicalis
JGI 4.1 fgenesh1_pm.C_scaffold_593000003 X. tropicalis

Models - mRNA (34)

Source Version Model Species
NCBI 10.0 mRNA011897 X. tropicalis
NCBI 10.1 XBmRNA66457 X. laevis.L
NCBI 10.1 XBmRNA71926 X. laevis.S
ENSEMBL 10.0 ENSXETT00000016200 X. tropicalis
ENSEMBL 10.0 ENSXETT00000089076 X. tropicalis
ENSEMBL 10.0 ENSXETT00000082000 X. tropicalis
JGI 9.1 Xelaev18038888m X. laevis.L
JGI 9.1 Xelaev18042219m X. laevis.S
Xenbase 9.1 rna12073 X. tropicalis
Xenbase 9.2 rna43804 X. laevis.L
Xenbase 9.2 rna74013 X. laevis.S
ENSEMBL 9.1 ENSXETT00000016200 X. tropicalis
JGI 8.0 Xetrov14033413m X. tropicalis
JGI 7.1 Xetro.H00659.4 X. tropicalis
JGI 7.1 Xetro.H00659.2 X. tropicalis
JGI 7.1 Xetro.H00659.1 X. tropicalis
JGI 7.1 Xetro.H00659.3 X. tropicalis
JGI 7.2 Xelaev16015742m X. laevis.S
JGI 6.0 XeXenL6RMv10025488m X. laevis.S
JGI 4.1 e_gw1.593.40.1 X. tropicalis
ENSEMBL 4.1 ENSXETT00000016200 X. tropicalis
JGI 4.1 e_gw1.593.16.1 X. tropicalis
JGI 4.1 e_gw1.593.42.1 X. tropicalis
JGI 4.1 gw1.593.16.1 X. tropicalis
JGI 4.1 gw1.593.40.1 X. tropicalis
JGI 4.1 gw1.593.42.1 X. tropicalis
JGI 4.1 estExt_FilteredModels1.C_5930006 X. tropicalis
JGI 4.1 estExt_Genewise1.C_5930016 X. tropicalis
JGI 4.1 estExt_Genewise1.C_5930040 X. tropicalis
JGI 4.1 estExt_Genewise1.C_5930042 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_5930008 X. tropicalis
JGI 4.1 estExt_fgenesh1_pm.C_5930003 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_593000008 X. tropicalis
JGI 4.1 fgenesh1_pm.C_scaffold_593000003 X. tropicalis

mRNAs (5)

Clone Accession Species Library Anatomy Stage
IMAGE:7732499 BC158353 X. tropicalis
XM_002940284 X. tropicalis
IMAGE:3379086 BC089275 X. laevis.S Wellcome CRC pSK egg egg unfertilized egg stage
XM_018233046 X. laevis.S
XM_018229925 X. laevis.L

ESTs (67)

Clone Accession 5'/3' Species Library Anatomy Stage
TNeu112k18 AL788224 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
xtbs12N16 CN077141 5' X. tropicalis Xenopus tropicalis xtbs plasmid library central nervous system NF stage 58 to NF stage 64
IMAGE:8869201 EL709233 5' X. tropicalis NICHD_XGC_tropLimb_m limb NF stage 55 to NF stage 66
IMAGE:7744214 DN037610 5' X. tropicalis NIH_XGC_tropLiv1 liver frog
IMAGE:7569236 CX457908 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7535840 CX476743 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7597964 CX387215 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7579217 CX417596 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7791067 CX324544 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
st32h23 DC172654 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
IMAGE:7523221 CX472850 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7520224 CX480925 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7674461 CX884114 5' X. tropicalis NIH_XGC_tropBrn4 brain frog
IMAGE:7695621 CX924192 5' X. tropicalis NIH_XGC_tropTe4 testis frog
IMAGE:7717706 CX979747 5' X. tropicalis NIH_XGC_tropInt1 intestine frog
TTpA019j10 BX714947 5' X. tropicalis XGC-tadpole whole organism NF stage 35 and 36 to NF stage 40
TTpA066e11 BX720571 5' X. tropicalis XGC-tadpole whole organism NF stage 35 and 36 to NF stage 40
TTpA066f11 BX723827 5' X. tropicalis XGC-tadpole whole organism NF stage 35 and 36 to NF stage 40
TTpA066e02 BX737720 5' X. tropicalis XGC-tadpole whole organism NF stage 35 and 36 to NF stage 40
THdA010e09 CR566794 5' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
THdA010e11 CR566796 5' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
TNeu096m18 AL786690 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
IMAGE:7674461 CX884113 3' X. tropicalis NIH_XGC_tropBrn4 brain frog
IMAGE:7569236 CX457907 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
xtbs12N16 CN077140 3' X. tropicalis Xenopus tropicalis xtbs plasmid library central nervous system NF stage 58 to NF stage 64
IMAGE:7523221 CX472849 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7535840 CX476742 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7520224 CX480924 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7717706 CX979746 3' X. tropicalis NIH_XGC_tropInt1 intestine frog
IMAGE:7744214 DN037609 3' X. tropicalis NIH_XGC_tropLiv1 liver frog
TNeu112k18 BX700400 3' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TTpA019j10 BX714948 3' X. tropicalis XGC-tadpole whole organism NF stage 35 and 36 to NF stage 40
TTpA028c16 BX743093 3' X. tropicalis XGC-tadpole whole organism NF stage 35 and 36 to NF stage 40
THdA024m02 CR571156 3' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
IMAGE:7791067 CX324543 3' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
xlk77c14ex DC060040 5' X. laevis.S Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
xl322a02 DC129593 5' X. laevis.S Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
xl304j07 DC124421 5' X. laevis.S Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
XL446o24ex BP684785 5' X. laevis.S Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
xlk111l01ex DC039352 5' X. laevis.S Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
xlk1m05ex DC053201 5' X. laevis.S Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
xlk119c01ex DC041693 5' X. laevis.S Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
xlk141f10ex DC048928 5' X. laevis.S Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
IMAGE:6870767 CA982147 5' X. laevis.S Wellcome CRC pSK egg egg unfertilized egg stage
IMAGE:5514317 CF286999 5' X. laevis.S NICHD_XGC_Emb4 whole organism NF stage 31 to NF stage 32
IMAGE:5440219 CF287972 5' X. laevis.S NICHD_XGC_Emb4 whole organism NF stage 31 to NF stage 32
XL062a03 BJ059249 5' X. laevis.S NIBB Mochii normalized Xenopus tailbud library whole organism NF stage 25
XL432o16ex BP679788 5' X. laevis.S Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
IMAGE:7299727 CO384304 5' X. laevis.S Blumberg_Cho dorsal blastopore lip upper blastopore lip NF stage 7 to NF stage 9
XL475d23ex BP694677 5' X. laevis.S Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
IMAGE:3380022 BE506786 5' X. laevis.S Wellcome CRC pSK animal cap animal cap NF stage 7 to NF stage 9
IMAGE:3379086 BF048687 5' X. laevis.S Wellcome CRC pSK egg egg unfertilized egg stage
IMAGE:3473171 BF613114 5' X. laevis.S Wellcome CRC pRN3 dorsal lip upper blastopore lip NF stage 10 to NF stage 12.5
IMAGE:3558123 BG579109 5' X. laevis.S Wellcome CRC pRN3 St10 5 whole organism NF stage 10.5
rxlk1m05ex DC019837 3' X. laevis.S Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
rxlk111l01ex DC006428 3' X. laevis.S Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
rxlk77c14ex DC026583 3' X. laevis.S Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
rxl304j07 DC089512 3' X. laevis.S Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
rxl322a02 DC093810 3' X. laevis.S Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
XL446o24ex BP720666 3' X. laevis.S Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
rxlk119c01ex DC008786 3' X. laevis.S Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
rxlk141f10ex DC015654 3' X. laevis.S Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
XL002a17 BJ044766 3' X. laevis.S NIBB Mochii normalized Xenopus neurula library whole organism NF stage 15
XL062a03 BJ077766 3' X. laevis.S NIBB Mochii normalized Xenopus tailbud library whole organism NF stage 25
IMAGE:3301516 BF071779 3' X. laevis.S Blackshear/Soares normalized Xenopus egg library egg unfertilized egg stage
IMAGE:3558123 BG555917 3' X. laevis.S Wellcome CRC pRN3 St10 5 whole organism NF stage 10.5
IMAGE:4084105 BI445773 3' X. laevis.S Wellcome CRC pRN3 St13 17 egg animal cap whole organism NF stage 13 to NF stage 21