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Gene/Clone	Species	Stage	Anatomy Item	Experimenter
cyp26a1	xenopus		embryo [+] pronephric nephrostome,pronephric duct,animal blastomere,animal hemisphere,germ plasm,vegetal blastomere,vegetal hemisphere,pronephric nephron,late proximal tubule,early distal tubule,early proximal tubule,late distal tubule,glomus,pronephric sinus,pronephric kidney,primary germ layer,blastomere,embryonic structure,podocyte,early embryonic cell,animal pole,pronephric tubule,vegetal pole,glomeral nexus,proximal tubule,distal tubule,proximal tubule branch,coelom,glomerular mesangial cell,glomerular epithelial cell,germinal granule,prime meridian,Roux spot,fasciculated network of fibrils,germinal vesicle,mitochondrial cloud,oocyte cortex,ooplasm,ring structure,subcortical cytoplasm,vegetal cortex,wedge region,yolk platelet,anatomical group,anatomical region,anatomical space,animal blastomere,blastomere D1,blastomere D1.1,blastomere D1.1.1,blastomere D1.1.2,blastomere D1.2,blastomere D1.2.1,blastomere D1.2.2,blastomere D2,blastomere D2.1,blastomere D2.1.1,blastomere D2.1.2,blastomere D2.2,blastomere D2.2.1,blastomere D2.2.2,blastomere V1,blastomere V1.1,blastomere V1.1.1,blastomere V1.1.2,blastomere V1.2,blastomere V1.2.1,blastomere V1.2.2,blastomere V2,blastomere V2.1,blastomere V2.1.1,blastomere V2.1.2,blastomere V2.2,blastomere V2.2.1,blastomere V2.2.2,egg,embryonic structure,glomeral nexus,mesonephric duct,multicellular anatomical structure,oocyte,polar body,primary oogonium,primary spermatogonium,primordial germ cell,process,secondary oogonium,secondary spermatogonium,spermatid,spermatocyte,spermatozoon,vegetal blastomere

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Expression summary for cyp26a1

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Experiment	Species	Images	Stages	Anatomy	Assay
AxelDB CNRS UMR 8080	laevis	1 image	NF stage 29 and 30	tail bud, visceral pouch	in situ hybridization
Nagano T et al. (2006) Assay Paper	laevis	1 image	NF stage 17	neural plate, olfactory region, trigeminal placode	in situ hybridization
Shiotsugu J et al. (2004) Assay Paper	laevis	1 image	NF stage 11	marginal zone	in situ hybridization
Strate I et al. (2009) Assay Paper	laevis	1 image	NF stage 14 to NF stage 32	eye, neural plate, periocular region, pre-chordal neural plate, tail bud	in situ hybridization
de Roos K et al. (1999) Assay Paper	laevis	1 image	NF stage 10 to NF stage 17	anterior neural ridge, anterior placodal area, chordal neural plate, circumblastoporal collar, cranial neural crest, [+] marginal zone, pre-chordal neural plate	in situ hybridization
Paper	laevis	1 image	NF stage 27 to NF stage 37 and 38	anterior dorsal lateral plate region, eye, lens, olfactory region, otic vesicle, [+] pharyngeal arch, tail bud, tail tip	in situ hybridization
Role for retinoid signaling in left-right asymmetric digestive organ morphogenesis. Paper	laevis	1 image	NF stage 35 and 36 to NF stage 43	esophagus, foregut, hindgut, midgut, stomach	in situ hybridization
Increased XRALDH2 activity has a posteriorizing effect on the central nervous system of Xenopus embryos. Paper	laevis	1 image	NF stage 33 and 34	branchial arch, olfactory region, optic field, somite, stomodeal-hypophyseal primordium, [+] tail bud	in situ hybridization
Analysis of the expression of retinoic acid metabolising genes during Xenopus laevis organogenesis. Paper	laevis	2 images	NF stage 28 to NF stage 33 and 34	aortic arch, choroid fissure, eye, intersomitic vessel, lateral plate mesoderm, [+] lens, olfactory bulb, pharyngeal arch, retina, tail bud, tail tip	in situ hybridization
Clone: XCYP26 derived probe in situ hybridization	laevis	3 images	NF stage 11 to NF stage 26	anterior placodal area, axial mesoderm, circumblastoporal collar, involuted dorsal mesoderm, involuted ventral mesoderm, [+] optic field, optic vesicle, pharyngeal arch, stomodeal-hypophyseal primordium, tail bud	in situ hybridization
Expression of key retinoic acid modulating genes suggests active regulation during development and regeneration of the amphib... Paper	laevis	1 image	NF stage 53 to NF stage 55	hindlimb, hindlimb bud, limb bud, mesenchyme	in situ hybridization
Retinoic acid metabolizing factor xCyp26c is specifically expressed in neuroectoderm and regulates anterior neural patterning... Paper	laevis	1 image	NF stage 13 to NF stage 18	anterior neural fold, circumblastoporal collar, cranial neural crest, neural groove, neural plate border, [+] neuroectoderm, pre-chordal neural plate	in situ hybridization
Genome-wide analysis of gene expression during Xenopus tropicalis tadpole tail regeneration. Paper	tropicalis	1 image	NF stage 49 to NF stage 53	muscle, regenerating tail, tail somite, tail tip, ventral fin margin, [+] ventral tail fin	in situ hybridization
Tanibe M et al. (2008) Assay Paper	laevis	5 images	NF stage 13 to NF stage 35 and 36	anterior neural fold, anterior placodal area, brain, circumblastoporal collar, eye, [+] fin, forebrain, intersomitic vessel, lateral line, lens, medial ganglionic eminence, middle lateral line, neural plate border, neuroectoderm, olfactory placode, otic vesicle, posterior placodal area, pre-chordal neural plate, pronephric duct, pronephric tubule, tail bud, ventral blood island, visceral pouch	in situ hybridization
Fgf is required to regulate anterior-posterior patterning in the Xenopus lateral plate mesoderm. Paper	laevis	2 images	NF stage 18 to NF stage 20	anterior neural ridge, axial mesoderm, mesoderm, paraxial mesoderm, presumptive midbrain-hindbrain boundary	in situ hybridization
Retinol dehydrogenase 10 is a feedback regulator of retinoic acid signalling during axis formation and patterning of the cent... Xenbase Image	laevis	1 image	NF stage 22	anterior neural fold, posterior placodal area, pre-chordal neural plate, pre-chordal neural plate border	in situ hybridization
Expression of retinoic acid 4-hydroxylase (CYP26) during mouse and Xenopus laevis embryogenesis. Paper	laevis	1 image	NF stage 10 to NF stage 32	anterior neural ridge, anterior placodal area, chordal neural plate, circumblastoporal collar, cranial neural crest, [+] intersomitic region, lateral plate mesoderm, marginal zone, olfactory bulb, olfactory placode, pharyngeal arch, pre-chordal neural plate, retina, retinal neural layer, roof plate, tail bud, trunk	in situ hybridization
The germ cell nuclear factor is required for retinoic acid signaling during Xenopus development. Paper	laevis	1 image	NF stage 17	anterior placodal area, chordal neural plate, circumblastoporal collar, lateral plate mesoderm, neural plate, [+] pre-chordal neural plate, trigeminal placode	in situ hybridization
Kam RK et al. (2013) Assay Paper	laevis	1 image	NF stage 12 to NF stage 35 and 36	eye, lens, neural plate, olfactory placode, pronephric duct, [+] tail tip	in situ hybridization
Patient Lab	laevis	18 images	NF stage 9 to NF stage 24	animal cap, animal hemisphere, anterior neural ridge, blastopore lip, circumblastoporal collar, [+] cranial neural crest, head, involuting marginal zone, lateral plate mesoderm, marginal zone, neural crest, neural plate, neuroectoderm, optic vesicle, pharyngeal arch, posterior placodal area, prechordal plate, preplacodal ectoderm, presomitic mesoderm, sensorial layer, trunk neural crest, vegetal part, early involuting	in situ hybridization
G protein-coupled receptors Flop1 and Flop2 inhibit Wnt/β-catenin signaling and are essential for head formation in Xenopus. Paper	laevis	1 image	NF stage 9	animal cap, animal cap inner layer, animal hemisphere, animal pole	in situ hybridization
Gawantka V et al. (1998) Assay Paper	laevis	2 images	NF stage 10.5 to NF stage 29 and 30	ectoderm, posterior wall of neurenteric canal, tail bud	in situ hybridization
Timing is everything: Reiterative Wnt, BMP and RA signaling regulate developmental competence during endoderm organogenesis. Paper	laevis	1 image	NF stage 10.5 to NF stage 33 and 34	eye, head region, lateral plate mesoderm, mesoderm, neuroectoderm, [+] pharyngeal region, pharynx	in situ hybridization
Janesick A et al. (2018) Assay Paper	laevis	2 images	NF stage 10.5 to NF stage 11	circumblastoporal collar, marginal zone, mesoderm	in situ hybridization
Retinol binding protein 1 affects Xenopus anterior neural development via all-trans retinoic acid signaling. Paper	laevis	2 images	NF stage 29 and 30 to NF stage 35 and 36	anterior branchial crest, anterior dorsal lateral plate region, branchial arch, chordal neural crest, chordoneural hinge, [+] ciliary marginal zone, cranial neural crest, dorsal lateral plate mesoderm, eye, lateral plate mesoderm, lens, lens placode, paraxial mesoderm, peripheral retina, pharyngeal arch, posterior branchial crest, retina, ventral mesoderm	in situ hybridization
Gur M et al. (2022) Assay Paper	laevis	1 image	NF stage 11.5	anterior neuroectoderm, posterior region	in situ hybridization
XGC-tailbud-head Unigene tropicalis cDNA library	tropicalis		NF stage 28 to NF stage 29 and 30	head	cDNA Library
Xenopus laevis oocyte Unigene laevis cDNA library Xenopus IMAGE cDNA Library Xenopus IMAGE cDNA Library	laevis		NF stage 5 (16-cell) to NF stage 6 (32-cell)	oocyte	cDNA Library
Blackshear/Soares normalized Xenopus egg library Unigene laevis cDNA library	laevis		unfertilized egg stage	egg	cDNA Library
Wellcome CRC pSK egg Unigene laevis cDNA library Xenopus IMAGE cDNA Library	laevis		unfertilized egg stage	egg	cDNA Library
Xenopus laevis unfertilized egg cDNA library Unigene laevis cDNA library Xenopus IMAGE cDNA Library	laevis		unfertilized egg stage	egg	cDNA Library
Wellcome CRC pRN3 oocyte Unigene laevis cDNA library Xenopus IMAGE cDNA Library	laevis		unspecified stage	oocyte	cDNA Library
Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library Unigene laevis cDNA library	laevis		NF stage 12.5	ectoderm	cDNA Library
Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library Unigene laevis cDNA library	laevis		NF stage 12.5	endomesoderm	cDNA Library

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