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Search Criteria

Gene/Clone	Species	Stage	Anatomy Item	Experimenter
isl1	xenopus		pre-chordal neural plate [+] anterior neural fold,optic field,pre-chordal neural plate border,Muller cell,accessory olfactory bulb,adenohypophysis,amacrine cell,amygdala,anterior amygdala,anterior commissure,anterior entopeduncular nucleus,anterior entopeduncular region,anterior hypothalamus,anterior tectum,anterior thalamic nucleus,anterodorsal tegmental nucleus,anteroventral tegmental nucleus,basal forebrain,basal ganglion,bed nucleus of the stria terminalis,bipolar neuron,caudal tuberal region,cell body layer of the optic tectum,central amygdala,central nucleus of the thalamus,central retina,choroid,choroid fissure,ciliary body,ciliary marginal zone,conjunctiva,cornea,diencephalon,dorsal habenular nucleus,dorsal pallidum,dorsal pallium,dorsal septum,dorsal tegmentum,dorsal telencephalon,dorsal thalamus,eminentia thalami,external plexiform layer of the olfactory bulb,eye photoreceptor cell,globe,glomerular layer of the olfactory bulb,granule cell,granule cell layer of the olfactory bulb,habenula,horizontal cell,hypophysis,hypothalamus,infundibulum,inner limiting membrane,iris,lateral amygdala,lateral forebrain bundle,lateral ganglionic eminence,lateral hypothalamic nucleus,lateral pallium,lateral septum,laterodorsal tegmental nucleus,lens,lens epithelium,lens fiber cell mass,lens placode,lens transitional zone,lower eyelid,magnocellular preoptic nucleus,mammilary region,medial amygdala,medial ganglionic eminence,medial pallium,medial septum,melanotrope,mesencephalic artery,mesencephalic vein,midbrain tegmentum,mitral cell,mitral cell layer of the olfactory bulb,neurohypophysis,neuropil of the optic tectum,nucleus accumbens,nucleus of the diagonal band,oculomotor motornucleus,olfactory bulb,optic chiasm,optic disc,optic fiber layer,optic nerve,optic stalk,optic tectum,optic tract,outer limiting membrane,pallidum,pallium,pars distalis,pars intermedia,pars nervosa,peripheral retina,photoreceptor layer,pigment layer,pineal gland,posterior commissure,posterior hypothalamus,posterior tectum,posterodorsal tegmental nucleus,posteroventral tegmental nucleus,preoptic area,pretectum,prethalamus,prethalamus basal plate,prosomere,prosomere 4,prosomere 5,prosomere 6,pupil,radial glial cell,retina,retinal ganglion cell,retinal ganglion cell layer,retinal inner nuclear layer,retinal inner plexiform layer,retinal layer,retinal neural layer,retinal outer nuclear layer,retinal outer plexiform layer,retinal pigmented epithelium,retinal progenitor cell,retinal progenitor cell region,retinal stem cell,retinal stem cell region,retromammillary area,rostral tuberal region,sclera,striatum,subcommissural organ,subpallium,subthalamic nucleus,suprachiasmatic nucleus,supraoptoparaventricular region,telencephalon,telencephalon septum,thalamus,third ventricle,torus semicircularis,trochlear motornucleus,tuberal region,ventral habenular nucleus,ventral hypothalamic nucleus,ventral pallidum,ventral pallium,ventral septum,ventral tegmentum,ventricular layer of the optic tectum,ventrolateral thalamic nucleus,ventromedial thalamic nucleus,zona limitans intrathalamica,anterior neural tube,choroid fissure,eye,eye primordium,forebrain,iris,midbrain,optic nerve,optic stalk,optic tectum,optic vesicle

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Expression summary for isl1

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Experiment	Species	Images	Stages	Anatomy	Assay
Harland lab in situ screen Assay Harland Lab	tropicalis	1 image	NF stage 16 to NF stage 17	optic field	in situ hybridization
Harland lab in situ screen Assay Harland Lab	tropicalis	1 image	NF stage 28	eye, lens, pineal gland	in situ hybridization
Harland lab in situ screen Assay Harland Lab	tropicalis	1 image	NF stage 35 and 36	eye, pineal gland	in situ hybridization
Brade T et al. (2007) Assay Paper	laevis	2 images	NF stage 14 to NF stage 33 and 34	anterior neural fold, pineal gland, retina	in situ hybridization
Bardine N et al. (2009) Assay Paper	laevis	1 image	NF stage 27	eye, pineal gland	in situ hybridization
	xenopus	1 image	NF stage 40	retinal ganglion cell layer	immunohistochemistry
Neural crest migration requires the activity of the extracellular sulphatases XtSulf1 and XtSulf2. Paper	tropicalis	1 image	NF stage 28	pineal gland	in situ hybridization
Matrix metalloproteinases are required for retinal ganglion cell axon guidance at select decision points. Paper	laevis	1 image	NF stage 37 and 38	diencephalon, retina, retinal ganglion cell, retinal inner nuclear layer	in situ hybridization
Xenopus Meis3 protein lies at a nexus downstream to Zic1 and Pax3 proteins, regulating multiple cell-fates during early nervo... Paper	laevis	1 image	NF stage 33 and 34	pineal gland, retina	in situ hybridization
Xenopus elav-like genes are differentially expressed during neurogenesis.	laevis	1 image	NF stage 40	midbrain	immunohistochemistry
Hocking JC and McFarlane S (2007) Assay	laevis	1 image	NF stage 33 and 34	retina, retinal ganglion cell, retinal ganglion cell layer	immunohistochemistry
Transmembrane voltage potential controls embryonic eye patterning in Xenopus laevis.	laevis	1 image	NF stage 46	amacrine cell, eye, retina, retinal neural layer	in situ hybridization
Generation of functional eyes from pluripotent cells.	laevis	1 image	NF stage 41	eye, lens, retinal ganglion cell, retinal inner nuclear layer	immunohistochemistry
Generation of functional eyes from pluripotent cells.	laevis	1 image	NF stage 51	lens, retinal ganglion cell layer, retinal inner nuclear layer	immunohistochemistry
Viczian AS et al. (2009) Assay Paper	laevis	1 image	NF stage 54	eye, retina, retinal ganglion cell layer, retinal inner nuclear layer	immunohistochemistry
Zac1 promotes a Müller glial cell fate and interferes with retinal ganglion cell differentiation in Xenopus retina.	laevis	1 image	NF stage 40	retina, retinal ganglion cell, retinal ganglion cell layer	immunohistochemistry
A nutrient-sensitive restriction point is active during retinal progenitor cell differentiation. Paper	laevis	1 image	NF stage 41	central retina	immunohistochemistry
Mochizuki T et al. (2009) Assay	laevis	1 image	NF stage 41	retina	immunohistochemistry
Tae HJ et al. (2015) Assay Paper	laevis	1 image	NF stage 28	pineal gland	in situ hybridization
Retinotopic mapping requires focal adhesion kinase-mediated regulation of growth cone adhesion.	laevis	1 image	NF stage 35 and 36	retina	immunohistochemistry
The requirement of histone modification by PRDM12 and Kdm4a for the development of pre-placodal ectoderm and neural crest in... Paper	laevis	1 image	NF stage 15	pre-chordal neural plate	in situ hybridization
Webber CA et al. (2002) Assay	laevis	1 image	NF stage 40	diencephalon, midbrain	immunohistochemistry
GABA and development of the Xenopus optic projection.	laevis	1 image	NF stage 35 and 36	eye	immunohistochemistry
Patterns of hypothalamic regionalization in amphibians and reptiles: common traits revealed by a genoarchitectonic approach.	laevis	2 images	NF stage 45 to NF stage 58	preoptic area, prethalamus, suprachiasmatic nucleus	immunohistochemistry
Hanel ML and Hensey C (2006) Assay	laevis	1 image	NF stage 41	amacrine cell, retinal ganglion cell layer	immunohistochemistry
Pollock NS et al. (2002) Assay	laevis	1 image	NF stage 33 and 34	retina, retinal ganglion cell, retinal ganglion cell layer	immunohistochemistry
Fgfr signaling is required as the early eye field forms to promote later patterning and morphogenesis of the eye.	laevis	1 image	NF stage 40	central retina, eye, peripheral retina, retina, retinal ganglion cell layer, [+] retinal inner nuclear layer, retinal neural layer	immunohistochemistry
Spatial and temporal expressions of prune reveal a role in Müller gliogenesis during Xenopus retinal development.	laevis	1 image	NF stage 41	retinal ganglion cell layer	immunohistochemistry
Kha CX et al. (2018) Assay	laevis	1 image	NF stage 35 and 36 to NF stage 37 and 38	amacrine cell, bipolar neuron, eye, horizontal cell, retinal ganglion cell	immunohistochemistry
Pan Y et al. (2018) Assay	laevis	1 image	NF stage 41	retina, retinal ganglion cell, retinal ganglion cell layer	immunohistochemistry
Moreno N and González A (2017) Assay Paper	laevis	1 image	NF stage 37 and 38 to NF stage 56	central amygdala, nucleus accumbens, striatum, subpallium, telencephalon, [+] telencephalon septum	immunohistochemistry
The Retinal Homeobox (Rx) gene is necessary for retinal regeneration. Paper	laevis	1 image	NF stage 44 to NF stage 65	photoreceptor layer, retinal ganglion cell layer, retinal inner nuclear layer, retinal neural layer	immunohistochemistry
Mukherjee S et al. (2020) Assay Paper	tropicalis	2 images	NF stage 35 and 36	eye, midbrain	in situ hybridization

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