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Display additional annotations [+]
Gene |
Clone |
Species |
Stages |
Anatomy |
srsf3
|
|
tropicalis
|
NF stage 20
to
NF stage 33 and 34
|
otic vesicle
,
somite
,
ventral blood island
,
pharyngeal arch
,
eye
,
[+]
|
csnk1g1
|
|
tropicalis
|
NF stage 20
to
NF stage 28
|
otic vesicle
,
somite
,
pharyngeal arch
,
eye
,
central nervous system
,
[+]
|
supt6h
|
|
tropicalis
|
NF stage 20
to
NF stage 28
|
otic vesicle
,
brain
,
hindbrain
,
spinal cord
,
somite
,
[+]
|
fubp1
|
|
tropicalis
|
NF stage 33 and 34
|
otic vesicle
,
brain
,
spinal cord
,
somite
,
pharyngeal arch
,
[+]
|
fubp1
|
|
tropicalis
|
NF stage 20
|
pre-chordal neural plate
,
chordal neural plate
,
intermediate mesoderm
,
neural plate
,
neural tube
,
[+]
|
srsf5
|
|
tropicalis
|
NF stage 20
to
NF stage 40
|
otic vesicle
,
somite
,
pharyngeal arch
,
eye
,
central nervous system
,
[+]
|
sox7
|
|
tropicalis
|
NF stage 20
to
NF stage 33 and 34
|
olfactory placode
,
hindbrain
,
epidermis
,
epidermis outer layer
,
ciliated epidermal cell
,
[+]
|
hsf3
|
|
tropicalis
|
NF stage 33 and 34
|
otic vesicle
,
brain
,
spinal cord
,
somite
,
pronephric duct
,
[+]
|
hsf3
|
|
tropicalis
|
NF stage 20
|
pre-chordal neural plate
,
chordal neural plate
,
neural plate
,
paraxial mesoderm
,
neural tube
,
[+]
|
snrpd1
|
|
tropicalis
|
NF stage 32
|
otic vesicle
,
somite
,
ventral blood island
,
pharyngeal arch
,
eye
,
[+]
|
cpeb3
|
|
tropicalis
|
NF stage 18
to
NF stage 39
|
otic vesicle
,
pharyngeal arch
,
eye
,
central nervous system
,
pronephric nephron
|
cops2
|
|
tropicalis
|
NF stage 20
|
pre-chordal neural plate
,
intermediate mesoderm
,
eye primordium
,
neural plate
,
neural tube
,
[+]
|
cops2
|
|
tropicalis
|
NF stage 29 and 30
|
otic vesicle
,
brain
,
spinal cord
,
pharyngeal arch
,
eye
,
[+]
|
KIAA0586
|
|
tropicalis
|
NF stage 29 and 30
|
otic vesicle
,
ciliated epidermal cell
,
pronephric nephrostome
,
eye
,
central nervous system
,
[+]
|
csnk2b
|
|
tropicalis
|
NF stage 18
to
NF stage 40
|
somite
,
pharyngeal arch
,
eye
,
central nervous system
,
pronephric kidney
|
dusp4
|
|
tropicalis
|
NF stage 19
to
NF stage 40
|
ventral blood island
,
pharyngeal arch
,
eye
,
central nervous system
,
olfactory pit
,
[+]
|
elavl2
|
|
tropicalis
|
NF stage 20
to
NF stage 33 and 34
|
eye
,
central nervous system
|
ahctf1
|
|
tropicalis
|
NF stage 29 and 30
|
otic vesicle
,
brain
,
forebrain
,
hindbrain
,
midbrain-hindbrain boundary
,
[+]
|
dusp11
|
|
tropicalis
|
NF stage 32
|
otic vesicle
,
somite
,
pharyngeal arch
,
eye
,
olfactory pit
,
[+]
|
|
|
Fig. 4. The expression patterns of clones identified by the functional screen, examined by whole mount in situ hybridization using X. tropicalis embryos. Twenty-nine out of the 31 positive clones identified in the screen displayed identifiable in situ patterns of expression. The clones were divided into each of seven functional groups on the basis of their predicted/established function (A, transcription; B, cell signaling; C, post-transcription/translation; D, cell-cycle/apoptosis; E, metabolism; F, other functions; G, functionally unknown). The images are ordered by gene names (black). The main expression domains of each clone at all stages analyzed are indicated in red, although not all of these domains are represented in the photographs presented (cc, ciliated cells; cns, central nervous system; dt, distal tubules; e, eye; it, intermediate tubules; ms, migrating somite; n, primary neuron; ns, nephrostomes; op, olfactory pit; ov, otic vesicle; pa, pharyngeal arches; pcv, posterior cardinal veins; pn, pronephros; s, somite; vbi, ventral blood island). The numbers in each photograph indicate the developmental stage of embryos shown. Other abbreviations are: A, anterior view (dorsal is up); D, dorsal view (anterior is left); L, lateral view (anterior is left, dorsal is up). |
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|
llr1 (leucine rich repeat protein 1) gene expression in Xenopus tropicalis embryo, assayed via in situ hybridization, NF stage 29 & 30, lateral view, anterior left, dorsal up. |