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Gene/Clone	Species	Stage	Anatomy Item	Experimenter
msx1	xenopus		brain [+] forebrain,telencephalon,diencephalon,midbrain,hindbrain,midbrain-hindbrain boundary,hypophysis,ventricular zone,pineal gland,optic stalk,cerebellum,fourth ventricle,medulla oblongata,optic tectum,hypothalamus,optic chiasm,suprachiasmatic nucleus,rhombomere,optic tract,rhombic lip,metencephalic artery,metencephalic vein,mesencephalic artery,mesencephalic vein,olfactory bulb,infundibulum,ventral tegmentum,dorsal tegmentum,anterior hypothalamus,posterior hypothalamus,lateral ganglionic eminence,subpallium,medial ganglionic eminence,midbrain tegmentum,eminentia thalami,pallium,pretectum,prethalamus,zona limitans intrathalamica,thalamus,oculomotor motornucleus,dorsal thalamus,trochlear motornucleus,anterior tectum,posterior tectum,accessory olfactory bulb,amygdala,anterior amygdala,anterior commissure,anterior entopeduncular nucleus,anterior thalamic nucleus,anterodorsal tegmental nucleus,anteroventral tegmental nucleus,basal forebrain,basal ganglion,bed nucleus of the stria terminalis,central amygdala,central nucleus of the thalamus,dorsal column nucleus,dorsal habenular nucleus,dorsal pallidum,dorsal pallium,dorsal septum,external plexiform layer of the olfactory bulb,glomerular layer of the olfactory bulb,granule cell,granule cell layer of the cerebellum,granule cell layer of the olfactory bulb,habenula,isthmic nucleus,lateral amygdala,lateral forebrain bundle,lateral hypothalamic nucleus,lateral pallium,lateral septum,laterodorsal tegmental nucleus,locus coeruleus,magnocellular preoptic nucleus,medial amygdala,medial pallium,medial septum,mitral cell,mitral cell layer of the olfactory bulb,nucleus accumbens,nucleus of the diagonal band,pallidum,posterior commissure,posterodorsal tegmental nucleus,posteroventral tegmental nucleus,preoptic area,raphe nucleus,telencephalon septum,solitary tract,striatum,subcommissural organ,subthalamic nucleus,torus semicircularis,ventral habenular nucleus,ventral hypothalamic nucleus,ventral pallidum,ventral pallium,ventrolateral thalamic nucleus,ventromedial thalamic nucleus,prosomere,prosomere 4,prosomere 5,prosomere 6,brain ventricle,mammilary region,tuberal region,third ventricle,forebrain-midbrain boundary,ventricular layer of the optic tectum,neuropil of the optic tectum,cell body layer of the optic tectum,radial glial cell,neural stem cell,Mauthner cell,caudal tuberal region,rostral tuberal region,nucleus of the solitary tract,prethalamus basal plate,retromammillary area,nucleus reticularis medialis,nucleus reticularis superior,nucleus reticularis inferior,ventral septum,supraoptoparaventricular region,stria terminalis,anterior entopeduncular region,astrocyte,oligodendrocyte,astrocyte end-foot,melanotrope,adenohypophysis,neurohypophysis,pars distalis,pars nervosa,pars intermedia,dorsal telencephalon,pial cell,pia mater,amygdala,anterior amygdala,anterior entopeduncular nucleus,anterior tectum,astrocyte end-foot,basal ganglion,bed nucleus of the stria terminalis,cell body layer of the optic tectum,central amygdala,dorsal pallidum,dorsal septum,lateral amygdala,lateral septum,medial amygdala,medial septum,neuropil of the optic tectum,nucleus accumbens,nucleus of the diagonal band,pallidum,pars nervosa,posterior tectum,radial glial cell,striatum,subthalamic nucleus,telencephalon septum,ventral pallidum,ventral septum,ventricular layer of the optic tectum,Stirnorgan,amygdala,astrocyte,astrocyte end-foot,basal forebrain,basal ganglion,neurohypophysis,nucleus of the diagonal band,oligodendrocyte,optic nerve,optic tectum,pallidum,radial glial cell,striatum,telencephalon septum

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Expression summary for msx1

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Experiment	Species	Images	Stages	Anatomy	Assay
Harland lab in situ screen Assay Harland Lab	tropicalis	1 image	NF stage 32	brain, hindbrain	in situ hybridization
Schlosser G and Ahrens K (2004) Assay Paper	laevis	3 images	NF stage 21 to NF stage 33 and 34	hindbrain, midbrain	in situ hybridization
Fujimi TJ and Aruga J (2008) Assay Paper	laevis	1 image	NF stage 33 and 34	brain	in situ hybridization
Barker DM and Beck CW (2009) Assay Paper	laevis	1 image	NF stage 33 and 34	hindbrain	in situ hybridization
Smith TGas131h15 Assay Smith Lab	tropicalis	2 images	NF stage 26 to NF stage 33 and 34	brain, hindbrain	in situ hybridization
Molecular pathways needed for regeneration of spinal cord and muscle in a vertebrate. Paper	laevis	1 image	NF stage 29 and 30	brain, forebrain, hindbrain, midbrain	in situ hybridization
Xenopus msx1 mediates epidermal induction and neural inhibition by BMP4. Paper	laevis	1 image	NF stage 27 to NF stage 37 and 38	brain, hindbrain, midbrain	in situ hybridization
Xenopus msx1 mediates epidermal induction and neural inhibition by BMP4. Paper	laevis	1 image	NF stage 27	brain, hindbrain, midbrain	in situ hybridization
Xenopus msx1 mediates epidermal induction and neural inhibition by BMP4. Paper	laevis	1 image	NF stage 35 and 36	hindbrain, midbrain	in situ hybridization
Xenbase User Curated Experiment	laevis	1 image	NF stage 35 and 36	brain, hindbrain, midbrain	in situ hybridization
Rankin SA et al. (2012) Assay Paper	laevis	2 images	NF stage 33 and 34 to NF stage 35 and 36	brain	in situ hybridization
Chen JA et al. (2005) Assay Paper	tropicalis	1 image	NF stage 29 and 30	diencephalon, pineal gland	in situ hybridization
Sp8 regulates inner ear development. Paper	tropicalis	1 image	NF stage 33 and 34	brain	in situ hybridization
A gene expression map of the larval Xenopus laevis head reveals developmental changes underlying the evolution of new skelet... Paper	laevis	1 image	NF stage 33 and 34	hindbrain	in situ hybridization
Square T et al. (2014) Assay Paper	laevis	1 image	NF stage 35 and 36	brain, hindbrain, midbrain	in situ hybridization
Patient Lab	laevis	2 images	NF stage 29 and 30 to NF stage 32	brain	in situ hybridization
NICHD_XGC_olfb Unigene laevis cDNA library Xenopus IMAGE cDNA Library	laevis		unspecified stage	brain	cDNA Library

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