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Search Criteria

Gene/Clone	Species	Stage	Anatomy Item	Experimenter
nkx2-1	xenopus		head [+] lower eyelid,lens,retina,brain,forebrain,telencephalon,diencephalon,midbrain,hindbrain,midbrain-hindbrain boundary,hypophysis,ventricular zone,cranial ganglion,head mesoderm,ciliary marginal zone,head endoderm,pharyngeal arch,oral cavity,pineal gland,eye,cornea,globe,conjunctiva,sclera,iris,ciliary body,optic nerve,lens placode,choana,visceral pouch,pupil,posterior palatine artery,internal carotid artery,cerebral artery,ophthalmic artery,anterior palatine artery,external jugular vein,internal jugular vein,cranial nerve,tooth,tongue,gill primordium,choroid fissure,optic stalk,musculature of face,mouth,nostril,cranium,braincase and otic capsule skeleton,lower jaw,Meckel's cartilage,upper jaw,cerebellum,fourth ventricle,medulla oblongata,neurocranium,orbital region,olfactory region,occipital region,sphenoid region,otic region,oral epithelium,photoreceptor layer,retinal neural layer,retinal pigmented epithelium,retinal outer plexiform layer,retinal outer nuclear layer,optic fiber layer,retinal inner nuclear layer,inner limiting membrane,retinal ganglion cell layer,outer limiting membrane,retinal inner plexiform layer,optic tectum,craniofacial region,hypothalamus,optic chiasm,suprachiasmatic nucleus,rhombomere,lens epithelium,lens transitional zone,lens fiber cell mass,horizontal cell,bipolar neuron,amacrine cell,retinal ganglion cell,optic tract,eye photoreceptor cell,rhombic lip,head vasculature,retinal blood vessel,hyaloid blood vessel,cerebral vein,metencephalic artery,metencephalic vein,ophthalmic vein,vena capitis medialis,vena capitis lateralis,mesencephalic artery,mesencephalic vein,nasociliary artery,optic choroid vascular plexus,olfactory bulb,infundibulum,ventral tegmentum,dorsal tegmentum,anterior hypothalamus,posterior hypothalamus,lateral ganglionic eminence,mandibular artery,maxillary artery,facial vein,subpallium,medial ganglionic eminence,pharyngeal pouch,pharyngeal region,midbrain tegmentum,eminentia thalami,pallium,pretectum,prethalamus,zona limitans intrathalamica,thalamus,head mesenchyme,cranial muscle,processus retroarticularis of Meckel's cartilage,branchial basket,retinal stem cell region,retinal progenitor cell region,oculomotor motornucleus,dorsal thalamus,trochlear motornucleus,hatching gland primordium,central retina,peripheral retina,choroid,circumpharyngeal ridge,pharyngeal endoderm,retinal stem cell,retinal progenitor cell,anterior tectum,posterior tectum,pharyngeal mesenchyme,accessory olfactory bulb,amygdala,anterior amygdala,anterior commissure,anterior entopeduncular nucleus,anterior thalamic nucleus,anterodorsal tegmental nucleus,anteroventral tegmental nucleus,basal forebrain,basal ganglion,bed nucleus of the stria terminalis,central amygdala,central nucleus of the thalamus,dorsal column nucleus,dorsal habenular nucleus,dorsal pallidum,dorsal pallium,dorsal septum,external plexiform layer of the olfactory bulb,glomerular layer of the olfactory bulb,granule cell,granule cell layer of the cerebellum,granule cell layer of the olfactory bulb,habenula,isthmic nucleus,lateral amygdala,lateral forebrain bundle,lateral hypothalamic nucleus,lateral pallium,lateral septum,laterodorsal tegmental nucleus,locus coeruleus,magnocellular preoptic nucleus,medial amygdala,medial pallium,medial septum,mitral cell,mitral cell layer of the olfactory bulb,nucleus accumbens,nucleus of the diagonal band,pallidum,posterior commissure,posterodorsal tegmental nucleus,posteroventral tegmental nucleus,preoptic area,raphe nucleus,telencephalon septum,solitary tract,striatum,subcommissural organ,subthalamic nucleus,torus semicircularis,ventral habenular nucleus,ventral hypothalamic nucleus,ventral pallidum,ventral pallium,ventrolateral thalamic nucleus,ventromedial thalamic nucleus,prosomere,prosomere 4,prosomere 5,prosomere 6,brain ventricle,mammilary region,tuberal region,third ventricle,Muller cell,forebrain-midbrain boundary,ventricular layer of the optic tectum,neuropil of the optic tectum,cell body layer of the optic tectum,radial glial cell,neural stem cell,Mauthner cell,caudal tuberal region,rostral tuberal region,nucleus of the solitary tract,prethalamus basal plate,retromammillary area,nucleus reticularis medialis,nucleus reticularis superior,nucleus reticularis inferior,ventral septum,supraoptoparaventricular region,stria terminalis,optic disc,anterior entopeduncular region,astrocyte,oval window,oligodendrocyte,astrocyte end-foot,melanotrope,adenohypophysis,neurohypophysis,pars distalis,pars nervosa,pars intermedia,ethmoid bone,ethmoid region,lateral nasal prominence,medial nasal prominence,otic capsule,dorsal telencephalon,pial cell,pia mater,cephalic nerve,prootic bone,roof of mouth,intercanthal region,amygdala,anterior amygdala,anterior entopeduncular nucleus,anterior tectum,astrocyte end-foot,basal ganglion,bed nucleus of the stria terminalis,cell body layer of the optic tectum,central amygdala,choana,dorsal pallidum,dorsal septum,hatching gland cell,lateral amygdala,lateral septum,lens epithelium,lens fiber cell mass,lens transitional zone,medial amygdala,medial septum,neuropil of the optic tectum,nostril,nucleus accumbens,nucleus of the diagonal band,pallidum,pars nervosa,posterior tectum,radial glial cell,striatum,subthalamic nucleus,telencephalon septum,ventral pallidum,ventral septum,ventricular layer of the optic tectum,Stirnorgan,amygdala,anterior palatine artery,astrocyte,astrocyte end-foot,basal forebrain,basal ganglion,cerebral artery,cranial muscle,cranial muscle primordium,external gill,gill primordium,hatching gland,lens,m. cucullaris,m. depressor mandibulae,m. levator scapulae inferior,m. levator scapulae superior,m. petrohyoideus,nasal region,neurohypophysis,nucleus of the diagonal band,oligodendrocyte,optic nerve,optic tectum,pallidum,parotic crest,pharyngeal pouch,radial glial cell,striatum,taste bud,telencephalon septum

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Expression summary for nkx2-1

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Experiment	Species	Images	Stages	Anatomy	Assay
Harland lab in situ screen Assay Harland Lab	tropicalis	1 image	NF stage 28	brain, forebrain, olfactory bulb, telencephalon	in situ hybridization
McLin VA et al. (2007) Assay Paper	laevis	1 image	NF stage 35 and 36 to NF stage 37 and 38	diencephalon, forebrain, telencephalon	in situ hybridization
Seufert DW et al. (2005) Assay Paper	laevis	1 image	NF stage 31	brain, forebrain, telencephalon	in situ hybridization
Nieber F et al. (2009) Assay Paper	laevis	1 image	NF stage 29 and 30	forebrain	in situ hybridization
Galli A et al. (2003) Assay Paper	laevis	2 images	NF stage 21 to NF stage 22	diencephalon, forebrain	in situ hybridization
Paper	laevis	1 image	NF stage 22	forebrain, olfactory bulb	in situ hybridization
FoxG1 and TLE2 act cooperatively to regulate ventral telencephalon formation. Paper	laevis	1 image	NF stage 33 and 34	brain, forebrain, medial ganglionic eminence, subpallium, telencephalon	in situ hybridization
Lung specific developmental expression of the Xenopus laevis surfactant protein C and B genes. Paper	laevis	1 image	NF stage 37 and 38	diencephalon, forebrain, telencephalon	in situ hybridization
Role of X-Delta-2 in the early neural development of Xenopus laevis. Paper	laevis	1 image	NF stage 25	forebrain, telencephalon	in situ hybridization
Defining pallial and subpallial divisions in the developing Xenopus forebrain. Paper	laevis	3 images	NF stage 32 to NF stage 40	anterior hypothalamus, brain, diencephalon, forebrain, hypothalamus, [+] medial ganglionic eminence, optic stalk, pallium, posterior hypothalamus, subpallium, telencephalon, ventral pallium, ventricular zone	in situ hybridization
Developmental expression of the Xenopus Nkx2-1 and Nkx2-4 genes. Paper	laevis	1 image	NF stage 22 to NF stage 37 and 38	diencephalon, forebrain, telencephalon	in situ hybridization
Xenbase User Curated Experiment	laevis	1 image	NF stage 35 and 36	diencephalon, forebrain, olfactory bulb, telencephalon	in situ hybridization
Twisted gastrulation is required for forebrain specification and cooperates with Chordin to inhibit BMP signaling during X. t... Paper	tropicalis	1 image	NF stage 23	forebrain, telencephalon	in situ hybridization
Induction and patterning of the telencephalon in Xenopus laevis. Paper	laevis	1 image	NF stage 29 and 30	forebrain, telencephalon	in situ hybridization
Xenopus laevis FoxE1 is primarily expressed in the developing pituitary and thyroid. Paper	laevis	1 image	NF stage 37 and 38	diencephalon, forebrain	in situ hybridization
Retinoic acid is a key regulatory switch determining the difference between lung and thyroid fates in Xenopus laevis. Paper	laevis	1 image	NF stage 29 and 30 to NF stage 40	forebrain, olfactory bulb, telencephalon	in situ hybridization
Retinoic acid is a key regulatory switch determining the difference between lung and thyroid fates in Xenopus laevis. Paper	laevis	1 image	NF stage 37 and 38	brain, forebrain, olfactory bulb, telencephalon	in situ hybridization
Retinoic acid is a key regulatory switch determining the difference between lung and thyroid fates in Xenopus laevis. Paper	laevis	1 image	NF stage 37 and 38	forebrain, olfactory bulb, telencephalon	in situ hybridization
Wang JH et al. (2011) Assay Paper	laevis	1 image	NF stage 29 and 30	brain, forebrain, olfactory bulb, telencephalon	in situ hybridization
Suppression of Bmp4 signaling by the zinc-finger repressors Osr1 and Osr2 is required for Wnt/β-catenin-mediated lung specif... Paper	laevis	1 image	NF stage 33 and 34 to NF stage 35 and 36	brain, forebrain, olfactory bulb	in situ hybridization
Rankin SA et al. (2012) Assay Paper	laevis	4 images	NF stage 28 to NF stage 37 and 38	brain, eye, forebrain, head, hindbrain, [+] midbrain, olfactory bulb, pharyngeal arch	in situ hybridization
An essential role for LPA signalling in telencephalon development. Paper	laevis	2 images	NF stage 25 to NF stage 35 and 36	forebrain, medial ganglionic eminence, telencephalon	in situ hybridization
GABAergic specification in the basal forebrain is controlled by the LIM-hd factor Lhx7.	laevis	1 image	NF stage 35 and 36	diencephalon, hypothalamus, medial ganglionic eminence	immunohistochemistry
Rankin SA et al. (2014) Assay Paper	laevis	2 images	NF stage 33 and 34 to NF stage 35 and 36	brain, diencephalon, eye, forebrain, olfactory bulb, [+] telencephalon	in situ hybridization
Juraver-Geslin HA et al. (2014) Assay Paper	laevis	1 image	NF stage 27	basal forebrain, forebrain	in situ hybridization
Patterns of hypothalamic regionalization in amphibians and reptiles: common traits revealed by a genoarchitectonic approach.	laevis	2 images	NF stage 45 to NF stage 56	posterior hypothalamus, preoptic area, suprachiasmatic nucleus	immunohistochemistry
A Retinoic Acid-Hedgehog Cascade Coordinates Mesoderm-Inducing Signals and Endoderm Competence during Lung Specification. Paper	laevis	1 image	NF stage 35 and 36	forebrain	in situ hybridization
Spatio-temporal expression of Pax6 in Xenopus forebrain. Paper	laevis	1 image	NF stage 62	brain	in situ hybridization
Prolonged FGF signaling is necessary for lung and liver induction in Xenopus. Paper	laevis	1 image	NF stage 37 and 38	eye, forebrain	in situ hybridization
Genomic integration of Wnt/β-catenin and BMP/Smad1 signaling coordinates foregut and hindgut transcriptional programs. Paper	laevis	1 image	NF stage 35 and 36	forebrain, hindbrain	in situ hybridization
Expression of the genes Emx1, Tbr1, and Eomes (Tbr2) in the telencephalon of Xenopus laevis confirms the existence of a vent... Paper	laevis	1 image	adult frog stage	bed nucleus of the stria terminalis, brain, forebrain, medial amygdala, pallidum, [+] telencephalon	in situ hybridization
Timing is everything: Reiterative Wnt, BMP and RA signaling regulate developmental competence during endoderm organogenesis. Paper	laevis	1 image	NF stage 33 and 34 to NF stage 37 and 38	forebrain	immunohistochemistry
Timing is everything: Reiterative Wnt, BMP and RA signaling regulate developmental competence during endoderm organogenesis. Paper	laevis	1 image	NF stage 33 and 34 to NF stage 37 and 38	brain, forebrain	in situ hybridization
Evolutionarily conserved Tbx5-Wnt2/2b pathway orchestrates cardiopulmonary development. Paper	laevis	3 images	NF stage 35 and 36	brain, forebrain, retina	in situ hybridization
Defining pallial and subpallial divisions in the developing Xenopus forebrain. Paper	laevis	1 image	NF stage 32 to NF stage 40	dorsal pallium, forebrain, lateral pallium, medial pallium, pallium, [+] telencephalon, ventral pallium	in situ hybridization
Retinoic acid-induced expression of Hnf1b and Fzd4 is required for pancreas development in Xenopus laevis. Paper	laevis	1 image	NF stage 35 and 36 to NF stage 37 and 38	forebrain	in situ hybridization
Griffin JN et al. (2018) Assay Paper	tropicalis	1 image	NF stage 37 and 38	forebrain	in situ hybridization
XGC-tailbud-head Unigene tropicalis cDNA library	tropicalis		NF stage 28 to NF stage 29 and 30	head	cDNA Library

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