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Gene/Clone	Species	Stage	Anatomy Item	Experimenter
shh	xenopus		forebrain [+] telencephalon,diencephalon,hypophysis,optic stalk,hypothalamus,optic chiasm,suprachiasmatic nucleus,optic tract,olfactory bulb,infundibulum,anterior hypothalamus,posterior hypothalamus,lateral ganglionic eminence,subpallium,medial ganglionic eminence,eminentia thalami,pallium,pretectum,prethalamus,zona limitans intrathalamica,thalamus,dorsal thalamus,accessory olfactory bulb,amygdala,anterior amygdala,anterior commissure,anterior entopeduncular nucleus,anterior thalamic nucleus,basal forebrain,basal ganglion,bed nucleus of the stria terminalis,central amygdala,central nucleus of the thalamus,dorsal habenular nucleus,dorsal pallidum,dorsal pallium,dorsal septum,external plexiform layer of the olfactory bulb,glomerular layer of the olfactory bulb,granule cell,granule cell layer of the olfactory bulb,habenula,lateral amygdala,lateral forebrain bundle,lateral hypothalamic nucleus,lateral pallium,lateral septum,magnocellular preoptic nucleus,medial amygdala,medial pallium,medial septum,mitral cell,mitral cell layer of the olfactory bulb,nucleus accumbens,nucleus of the diagonal band,pallidum,preoptic area,telencephalon septum,striatum,subcommissural organ,subthalamic nucleus,ventral habenular nucleus,ventral hypothalamic nucleus,ventral pallidum,ventral pallium,ventrolateral thalamic nucleus,ventromedial thalamic nucleus,prosomere,prosomere 4,prosomere 5,prosomere 6,mammilary region,tuberal region,third ventricle,caudal tuberal region,rostral tuberal region,prethalamus basal plate,retromammillary area,ventral septum,supraoptoparaventricular region,anterior entopeduncular region,melanotrope,adenohypophysis,neurohypophysis,pars distalis,pars nervosa,pars intermedia,dorsal telencephalon

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Expression summary for shh

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Experiment	Species	Images	Stages	Anatomy	Assay
Olfactory and lens placode formation is controlled by the hedgehog-interacting protein (Xhip) in Xenopus. Paper	laevis	1 image	NF stage 32	diencephalon	in situ hybridization
R-Spondin2 is a secreted activator of Wnt/beta-catenin signaling and is required for Xenopus myogenesis. Paper	laevis	1 image	NF stage 50	thalamus, zona limitans intrathalamica	in situ hybridization
Xenopus sonic hedgehog guides retinal axons along the optic tract. Paper	laevis	1 image	NF stage 32 to NF stage 37 and 38	optic stalk	in situ hybridization
A novel function for Hedgehog signalling in retinal pigment epithelium differentiation. Paper	laevis	1 image	NF stage 41	forebrain	in situ hybridization
The role of Xenopus dickkopf1 in prechordal plate specification and neural patterning. Paper	xenopus	1 image	NF stage 44	telencephalon	in situ hybridization
Takabatake T et al. (2000) Assay Paper	laevis	1 image	NF stage 35 and 36	forebrain	in situ hybridization
Transmembrane voltage potential controls embryonic eye patterning in Xenopus laevis. Paper	laevis	1 image	NF stage 29 and 30	forebrain	in situ hybridization
Rankin SA et al. (2012) Assay Paper	laevis	1 image	NF stage 33 and 34 to NF stage 35 and 36	diencephalon, forebrain	in situ hybridization
Distinct expression and shared activities of members of the hedgehog gene family of Xenopus laevis. Paper	laevis	1 image	NF stage 29 and 30	forebrain	in situ hybridization
Multiple stage-dependent roles for histone deacetylases during amphibian embryogenesis: implications for the involvement of ... Paper	laevis	1 image	NF stage 33 and 34 to NF stage 41	forebrain	in situ hybridization
Sulf1 influences the Shh morphogen gradient during the dorsal ventral patterning of the neural tube in Xenopus tropicalis. Paper	tropicalis	1 image	NF stage 35 and 36	pretectum	in situ hybridization
Early development of the neural plate: New roles for apoptosis and for one of its main effectors caspase-3. Paper	laevis	1 image	NF stage 27	subpallium, zona limitans intrathalamica	in situ hybridization
Juraver-Geslin HA et al. (2014) Assay Paper	laevis	5 images	NF stage 29 and 30 to NF stage 37 and 38	basal forebrain, forebrain, zona limitans intrathalamica	in situ hybridization
Patterns of hypothalamic regionalization in amphibians and reptiles: common traits revealed by a genoarchitectonic approach.	laevis	1 image	NF stage 46	preoptic area	immunohistochemistry
Patient Lab	laevis	1 image	NF stage 10.5 to NF stage 28	forebrain	in situ hybridization
Prepatterning and patterning of the thalamus along embryonic development of Xenopus laevis. Paper	laevis	1 image	NF stage 33 and 34 to NF stage 37 and 38	diencephalon, forebrain, zona limitans intrathalamica	immunohistochemistry
Prepatterning and patterning of the thalamus along embryonic development of Xenopus laevis. Paper	laevis	1 image	NF stage 33 and 34 to NF stage 37 and 38	diencephalon, forebrain, prethalamus, telencephalon, thalamus, [+] zona limitans intrathalamica	in situ hybridization
Juraver-Geslin HA et al. (2011) Assay Paper	laevis	1 image	NF stage 32	zona limitans intrathalamica	in situ hybridization

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