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Search Criteria

Gene/Clone	Species	Stage	Anatomy Item	Experimenter
shh	xenopus		neural plate [+] midbrain-hindbrain boundary,pre-chordal neural plate,chordal neural plate,notoplate,neural groove,anterior neural fold,Rohon-Beard neuron,neural fold,optic field,pre-chordal neural plate border,chordal neural plate border,neural plate border,anterior neural ridge,isthmic nucleus,forebrain-midbrain boundary,posterior neural fold,Bowman's gland,Mauthner cell,Muller cell,Rathke's pouch,accessory olfactory bulb,adenohypophysis,afferent neuron,amacrine cell,amygdala,anterior amygdala,anterior branchial crest,anterior commissure,anterior entopeduncular nucleus,anterior entopeduncular region,anterior hypothalamus,anterior neural tube,anterior placodal area,anterior tectum,anterior thalamic nucleus,anterodorsal tegmental nucleus,anteroventral tegmental nucleus,astrocyte,astrocyte end-foot,basal forebrain,basal ganglion,bed nucleus of the stria terminalis,bipolar neuron,brain ventricle,branchial crest,buccopharyngeal membrane,cardiac neural crest,caudal tuberal region,cell body layer of the optic tectum,central amygdala,central canal,central nucleus of the thalamus,central retina,cerebellum,chordal neural crest,chordoneural hinge,choroid,choroid fissure,ciliary body,ciliary marginal zone,conjunctiva,cornea,cranial neural crest,diencephalon,dorsal column nucleus,dorsal funiculus,dorsal habenular nucleus,dorsal pallidum,dorsal pallium,dorsal septum,dorsal tegmentum,dorsal telencephalon,dorsal thalamus,dorsolateral neural tube,efferent neuron,eminentia thalami,enteric neuron,ethmoid bone,external plexiform layer of the olfactory bulb,eye photoreceptor cell,floor plate,forebrain,forebrain-midbrain boundary,fourth ventricle,frontal nerve,globe,glomerular layer of the olfactory bulb,granule cell,granule cell layer of the cerebellum,granule cell layer of the olfactory bulb,habenula,hindbrain,horizontal cell,hyoid crest,hypophysis,hypothalamus,infundibulum,inner limiting membrane,interneuron,iris,isthmic nucleus,lateral amygdala,lateral forebrain bundle,lateral funiculus,lateral ganglionic eminence,lateral hypothalamic nucleus,lateral pallium,lateral preplacodal ectoderm,lateral septum,laterodorsal tegmental nucleus,lens,lens epithelium,lens fiber cell mass,lens placode,lens transitional zone,locus coeruleus,lower eyelid,magnocellular preoptic nucleus,mammilary region,mandibular crest,mandibular nerve,maxillary nerve,medial amygdala,medial ganglionic eminence,medial pallium,medial septum,medulla oblongata,melanotrope,mesencephalic artery,mesencephalic vein,metencephalic artery,metencephalic vein,midbrain,midbrain tegmentum,midbrain-hindbrain boundary,migratory neural crest cell,migratory trunk neural crest cell,mitral cell,mitral cell layer of the olfactory bulb,nasociliary nerve,neural stem cell,neurenteric canal,neurohypophysis,neuropil of the optic tectum,nucleus accumbens,nucleus of the diagonal band,nucleus of the solitary tract,nucleus reticularis inferior,nucleus reticularis medialis,nucleus reticularis superior,oculomotor motornucleus,olfactory bulb,olfactory sensory neuron,oligodendrocyte,optic chiasm,optic disc,optic fiber layer,optic nerve,optic stalk,optic tectum,optic tract,oral cavity,oral epithelium,outer limiting membrane,pallidum,pallium,pars distalis,pars intermedia,pars nervosa,peripheral nerve,peripheral retina,photoreceptor layer,pia mater,pial cell,pigment layer,pineal gland,posterior branchial crest,posterior commissure,posterior hypothalamus,posterior neural tube,posterior placodal area,posterior tectum,posterior wall of neurenteric canal,posterodorsal tegmental nucleus,posteroventral tegmental nucleus,postmigratory neural crest cell,premigratory neural crest cell,preoptic area,preplacodal ectoderm,pretectum,prethalamus,prethalamus basal plate,processus retroarticularis of Meckel's cartilage,prosomere,prosomere 4,prosomere 5,prosomere 6,pupil,radial glial cell,raphe nucleus,retina,retinal ganglion cell,retinal ganglion cell layer,retinal inner nuclear layer,retinal inner plexiform layer,retinal layer,retinal neural layer,retinal outer nuclear layer,retinal outer plexiform layer,retinal pigmented epithelium,retinal progenitor cell,retinal progenitor cell region,retinal stem cell,retinal stem cell region,retromammillary area,rhombic lip,rhombomere,roof of mouth,roof plate,rostral tuberal region,sacral neural crest,sclera,solitary tract,spinal neuron,stria terminalis,striatum,subcommissural organ,subpallium,subthalamic nucleus,sulcus limitans of neural tube,suprachiasmatic nucleus,supraoptoparaventricular region,telencephalon,telencephalon septum,thalamus,third ventricle,torus semicircularis,trochlear motornucleus,trunk neural crest,tuberal region,vagal neural crest,ventral funiculus,ventral habenular nucleus,ventral hypothalamic nucleus,ventral pallidum,ventral pallium,ventral septum,ventral tegmentum,ventricular layer of the optic tectum,ventricular zone,ventrolateral neural tube,ventrolateral thalamic nucleus,ventromedial thalamic nucleus,zona limitans intrathalamica,Jacobson's organ,Meckel's cartilage,Rathke's pouch,afferent neuron,anterior branchial crest,anterior neural tube,brain,branchial crest,buccopharyngeal membrane,ceratohyal,choana,choroid fissure,cranial ganglion,cranial neural crest,cranial placode,craniofacial skeleton,dorsal tegmentum,dorsolateral neural tube,efferent neuron,enteric nervous system,enteric neuron,eye,eye primordium,floor plate,forebrain,glial cell,hindbrain,hyoid crest,hypophyseal primordium,hypophysis,iris,lateral preplacodal ectoderm,lens,lens placode,mandibular crest,melanoblast,melanophore,midbrain,migratory neural crest cell,mouth,mouth primordium,neural crest,neural tube,neurogenic placode,non-neurogenic ectodermal placode,olfactory epithelium,olfactory nerve,olfactory organ,olfactory pit,olfactory placode,optic nerve,optic stalk,optic tectum,optic vesicle,palatoquadrate,peripheral ganglion,posterior branchial crest,posterior neural tube,preplacodal ectoderm,roof plate,sensorial layer of neurectoderm,spinal cord,stomodeal-hypophyseal primordium,superficial layer of neurectoderm,tooth,trigeminal nerve,ventral tegmentum,ventrolateral neural tube

Too many results?Too few results?

Expression summary for shh

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Experiment	Species	Images	Stages	Anatomy	Assay
Harland lab in situ screen Assay Harland Lab	tropicalis	1 image	NF stage 20	neural groove, neural plate	in situ hybridization
Khokha MK et al. (2005) Assay Paper	tropicalis	2 images	NF stage 14 to NF stage 15	floor plate	in situ hybridization
López SL et al. (2003) Assay Paper	laevis	1 image	NF stage 15	chordal neural plate, neural groove, pre-chordal neural plate	in situ hybridization
Nguyen V et al. (2005) Assay Paper	laevis	1 image	NF stage 14	neural groove, neural plate	in situ hybridization
Offner N et al. (2005) Assay Paper	xenopus	1 image	NF stage 15 to NF stage 16	floor plate	in situ hybridization
Offner N et al. (2005) Assay Paper	laevis	1 image	NF stage 15 to NF stage 16	neural tube	in situ hybridization
Lupo G et al. (2005) Assay Paper	xenopus	2 images	neurula stage to NF stage 33 and 34	floor plate, neural groove, spinal cord	in situ hybridization
Silva AC et al. (2003) Assay Paper	laevis	1 image	NF stage 22 to NF stage 24	neural tube	in situ hybridization
Howell M et al. (2002) Assay Paper	xenopus	1 image	NF stage 35 and 36	brain, eye	in situ hybridization
Inomata H et al. (2008) Assay Paper	laevis	2 images	NF stage 13	neural groove, pre-chordal neural plate	in situ hybridization
Paper	laevis	1 image	NF stage 14 to NF stage 28	floor plate, neural plate, notoplate, pre-chordal neural plate	in situ hybridization
The secreted serine protease xHtrA1 stimulates long-range FGF signaling in the early Xenopus embryo. Paper	laevis	1 image	NF stage 14	neural groove	in situ hybridization
The presumptive floor plate (notoplate) induces behaviors associated with convergent extension in medial but not lateral neur... Paper	laevis	1 image	NF stage 11 to NF stage 13	notoplate	in situ hybridization
Cholesterol homeostasis in development: the role of Xenopus 7-dehydrocholesterol reductase (Xdhcr7) in neural development. Paper	laevis	1 image	NF stage 14 to NF stage 33 and 34	epibranchial placode, floor plate, neural groove, neural tube	in situ hybridization
Negative regulation of Hedgehog signaling by the cholesterogenic enzyme 7-dehydrocholesterol reductase. Paper	xenopus	1 image	NF stage 13 to NF stage 35 and 36	brain, floor plate, otic placode	in situ hybridization
Olfactory and lens placode formation is controlled by the hedgehog-interacting protein (Xhip) in Xenopus. Paper	laevis	1 image	NF stage 17 to NF stage 32	brain, diencephalon, floor plate, neural groove, neural plate, [+] notoplate, pre-chordal neural plate, ventricular zone	in situ hybridization
Neural tube closure requires Dishevelled-dependent convergent extension of the midline. Paper	laevis	1 image	NF stage 21	neural groove, neural plate	in situ hybridization
Distinct expression of two types of Xenopus Patched genes during early embryogenesis and hindlimb development. Paper	laevis	1 image	NF stage 14	neural groove, neural plate	in situ hybridization
Neuroectodermal specification and regionalization of the Spemann organizer in Xenopus. Paper	xenopus	1 image	NF stage 10 to NF stage 12.5	floor plate	in situ hybridization
R-Spondin2 is a secreted activator of Wnt/beta-catenin signaling and is required for Xenopus myogenesis. Paper	laevis	1 image	NF stage 50	brain, neural tube, thalamus, zona limitans intrathalamica	in situ hybridization
Xenbase User Curated Experiment European Xenopus Resource Centre (EXRC)	tropicalis	1 image	NF stage 32	brain, eye	in situ hybridization
Xenopus sonic hedgehog guides retinal axons along the optic tract. Paper	laevis	1 image	NF stage 32 to NF stage 37 and 38	brain, floor plate, neural tube, optic stalk	in situ hybridization
A novel function for Hedgehog signalling in retinal pigment epithelium differentiation. Paper	laevis	1 image	NF stage 41	brain, forebrain, hindbrain, midbrain, mouth primordium, [+] pineal gland, retina	in situ hybridization
A novel function for Hedgehog signalling in retinal pigment epithelium differentiation. Paper	laevis	1 image	NF stage 33 and 34 to NF stage 42	eye, retina, retinal ganglion cell layer, retinal outer nuclear layer, retinal pigmented epithelium	in situ hybridization
The role of Xenopus dickkopf1 in prechordal plate specification and neural patterning. Paper	laevis	1 image	NF stage 13	neural groove, pre-chordal neural plate	in situ hybridization
The role of Xenopus dickkopf1 in prechordal plate specification and neural patterning. Paper	xenopus	1 image	NF stage 44	floor plate, midbrain, spinal cord, telencephalon	in situ hybridization
The Alzheimer-related gene presenilin-1 facilitates sonic hedgehog expression in Xenopus primary neurogenesis. Paper	laevis	1 image	NF stage 13 to NF stage 14	floor plate, neural groove, neural plate, neural tube	in situ hybridization
Suzuki M et al. (2010) Assay Paper	laevis	1 image	NF stage 15 to NF stage 16	floor plate, neural groove, neural plate, neural tube	in situ hybridization
Takabatake T et al. (2000) Assay Paper	laevis	2 images	NF stage 27 to NF stage 35 and 36	brain, floor plate, forebrain, spinal cord	in situ hybridization
Transmembrane voltage potential controls embryonic eye patterning in Xenopus laevis. Paper	laevis	1 image	NF stage 18 to NF stage 29 and 30	chordoneural hinge, forebrain, hindbrain, midbrain, neural groove	in situ hybridization
Tet3 CXXC Domain and Dioxygenase Activity Cooperatively Regulate Key Genes for Xenopus Eye and Neural Development. Paper	laevis	1 image	NF stage 14	neural tube	in situ hybridization
Essential role of CREB family proteins during Xenopus embryogenesis. Paper	laevis	1 image	NF stage 28	brain, spinal cord	in situ hybridization
Rankin SA et al. (2012) Assay Paper	laevis	1 image	NF stage 33 and 34 to NF stage 35 and 36	brain, diencephalon, floor plate, forebrain, hindbrain, [+] spinal cord	in situ hybridization
Beck CW and Slack JM (1998) Assay Paper	laevis	1 image	NF stage 32	chordoneural hinge, neural tube	in situ hybridization
Distinct expression and shared activities of members of the hedgehog gene family of Xenopus laevis. Paper	laevis	1 image	NF stage 19 to NF stage 29 and 30	anterior neural tube, brain, floor plate, forebrain, hindbrain, [+] midbrain, neural tube	in situ hybridization
Multiple stage-dependent roles for histone deacetylases during amphibian embryogenesis: implications for the involvement of ... Paper	laevis	1 image	NF stage 33 and 34 to NF stage 41	brain, forebrain, spinal cord	in situ hybridization
Sulf1 influences the Shh morphogen gradient during the dorsal ventral patterning of the neural tube in Xenopus tropicalis. Paper	tropicalis	1 image	NF stage 23 to NF stage 35 and 36	floor plate, neural tube	immunohistochemistry
Sulf1 influences the Shh morphogen gradient during the dorsal ventral patterning of the neural tube in Xenopus tropicalis. Paper	tropicalis	1 image	NF stage 23 to NF stage 35 and 36	floor plate, hindbrain, midbrain, pretectum, spinal cord	in situ hybridization
Rankin SA et al. (2014) Assay Paper	laevis	1 image	NF stage 32	brain, eye	in situ hybridization
The cytoskeletal protein Zyxin inhibits Shh signaling during the CNS patterning in Xenopus laevis through interaction with t... Paper	laevis	1 image	NF stage 27	floor plate, spinal cord	in situ hybridization
Stolow MA and Shi YB (1995) Assay Paper	laevis	1 image	NF stage 32	floor plate	in situ hybridization
Early development of the neural plate: New roles for apoptosis and for one of its main effectors caspase-3. Paper	laevis	1 image	NF stage 27	brain, subpallium, zona limitans intrathalamica	in situ hybridization
Juraver-Geslin HA et al. (2014) Assay Paper	laevis	5 images	NF stage 29 and 30 to NF stage 37 and 38	basal forebrain, forebrain, zona limitans intrathalamica	in situ hybridization
Patterns of hypothalamic regionalization in amphibians and reptiles: common traits revealed by a genoarchitectonic approach.	laevis	1 image	NF stage 46	preoptic area	immunohistochemistry
Patient Lab	laevis	6 images	NF stage 10.5 to NF stage 40	brain, forebrain, spinal cord	in situ hybridization
Koide T et al. (2006) Assay Paper	laevis	2 images	NF stage 22 to NF stage 44	brain, floor plate, neural tube	in situ hybridization
Peyrot SM et al. (2011) Assay Paper	laevis	4 images	NF stage 16 to NF stage 35 and 36	floor plate, neural groove, neural plate, neural tube	in situ hybridization
Prepatterning and patterning of the thalamus along embryonic development of Xenopus laevis. Paper	laevis	1 image	NF stage 33 and 34 to NF stage 37 and 38	brain, diencephalon, forebrain, zona limitans intrathalamica	immunohistochemistry
Prepatterning and patterning of the thalamus along embryonic development of Xenopus laevis. Paper	laevis	1 image	NF stage 33 and 34 to NF stage 37 and 38	diencephalon, forebrain, prethalamus, roof plate, telencephalon, [+] thalamus, zona limitans intrathalamica	in situ hybridization
Juraver-Geslin HA et al. (2011) Assay Paper	laevis	1 image	NF stage 32	zona limitans intrathalamica	in situ hybridization

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