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Search Criteria

Gene/Clone	Species	Stage	Anatomy Item	Experimenter
six1	xenopus		pre-chordal neural plate [+] anterior neural fold,optic field,pre-chordal neural plate border,Muller cell,accessory olfactory bulb,adenohypophysis,amacrine cell,amygdala,anterior amygdala,anterior commissure,anterior entopeduncular nucleus,anterior entopeduncular region,anterior hypothalamus,anterior tectum,anterior thalamic nucleus,anterodorsal tegmental nucleus,anteroventral tegmental nucleus,basal forebrain,basal ganglion,bed nucleus of the stria terminalis,bipolar neuron,caudal tuberal region,cell body layer of the optic tectum,central amygdala,central nucleus of the thalamus,central retina,choroid,choroid fissure,ciliary body,ciliary marginal zone,conjunctiva,cornea,diencephalon,dorsal habenular nucleus,dorsal pallidum,dorsal pallium,dorsal septum,dorsal tegmentum,dorsal telencephalon,dorsal thalamus,eminentia thalami,external plexiform layer of the olfactory bulb,eye photoreceptor cell,globe,glomerular layer of the olfactory bulb,granule cell,granule cell layer of the olfactory bulb,habenula,horizontal cell,hypophysis,hypothalamus,infundibulum,inner limiting membrane,iris,lateral amygdala,lateral forebrain bundle,lateral ganglionic eminence,lateral hypothalamic nucleus,lateral pallium,lateral septum,laterodorsal tegmental nucleus,lens,lens epithelium,lens fiber cell mass,lens placode,lens transitional zone,lower eyelid,magnocellular preoptic nucleus,mammilary region,medial amygdala,medial ganglionic eminence,medial pallium,medial septum,melanotrope,mesencephalic artery,mesencephalic vein,midbrain tegmentum,mitral cell,mitral cell layer of the olfactory bulb,neurohypophysis,neuropil of the optic tectum,nucleus accumbens,nucleus of the diagonal band,oculomotor motornucleus,olfactory bulb,optic chiasm,optic disc,optic fiber layer,optic nerve,optic stalk,optic tectum,optic tract,outer limiting membrane,pallidum,pallium,pars distalis,pars intermedia,pars nervosa,peripheral retina,photoreceptor layer,pigment layer,pineal gland,posterior commissure,posterior hypothalamus,posterior tectum,posterodorsal tegmental nucleus,posteroventral tegmental nucleus,preoptic area,pretectum,prethalamus,prethalamus basal plate,prosomere,prosomere 4,prosomere 5,prosomere 6,pupil,radial glial cell,retina,retinal ganglion cell,retinal ganglion cell layer,retinal inner nuclear layer,retinal inner plexiform layer,retinal layer,retinal neural layer,retinal outer nuclear layer,retinal outer plexiform layer,retinal pigmented epithelium,retinal progenitor cell,retinal progenitor cell region,retinal stem cell,retinal stem cell region,retromammillary area,rostral tuberal region,sclera,striatum,subcommissural organ,subpallium,subthalamic nucleus,suprachiasmatic nucleus,supraoptoparaventricular region,telencephalon,telencephalon septum,thalamus,third ventricle,torus semicircularis,trochlear motornucleus,tuberal region,ventral habenular nucleus,ventral hypothalamic nucleus,ventral pallidum,ventral pallium,ventral septum,ventral tegmentum,ventricular layer of the optic tectum,ventrolateral thalamic nucleus,ventromedial thalamic nucleus,zona limitans intrathalamica,anterior neural tube,choroid fissure,eye,eye primordium,forebrain,iris,midbrain,optic nerve,optic stalk,optic tectum,optic vesicle

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Expression summary for six1

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Experiment	Species	Images	Stages	Anatomy	Assay
Schlosser G and Ahrens K (2004) Assay Paper	laevis	7 images	NF stage 13 to NF stage 27	anterior neural fold, lens placode, pre-chordal neural plate	in situ hybridization
Borchers A et al. (2006) Assay Paper	xenopus	1 image	NF stage 19 to NF stage 21	anterior neural fold, eye primordium	in situ hybridization
Schlosser G et al. (2008) Assay Paper	laevis	2 images	NF stage 17	anterior neural fold, pre-chordal neural plate	in situ hybridization
Harland Lab Assay Harland Lab	tropicalis	1 image	NF stage 27	forebrain	in situ hybridization
An essential role of Xenopus Foxi1a for ventral specification of the cephalic ectoderm during gastrulation. Paper	laevis	1 image	NF stage 14 to NF stage 15	pre-chordal neural plate	in situ hybridization
Molecular cloning and embryonic expression of Xenopus Six homeobox genes. Paper	laevis	2 images	NF stage 29 and 30 to NF stage 39	lens, olfactory bulb	in situ hybridization
Six1 promotes a placodal fate within the lateral neurogenic ectoderm by functioning as both a transcriptional activator and r... Paper	laevis	1 image	NF stage 16	pre-chordal neural plate border	in situ hybridization
Xenopus Six1 gene is expressed in neurogenic cranial placodes and maintained in the differentiating lateral lines. Paper	laevis	1 image	NF stage 33 and 34	retina	in situ hybridization
Hairy2-Id3 interactions play an essential role in Xenopus neural crest progenitor specification. Paper	laevis	1 image	NF stage 19	optic field, pre-chordal neural plate	in situ hybridization
Hairy2-Id3 interactions play an essential role in Xenopus neural crest progenitor specification. Paper	laevis	1 image	NF stage 16 to NF stage 19	anterior neural fold	in situ hybridization
Dickinson AJ and Sive HL (2009) Assay Paper	laevis	1 image	NF stage 24	eye, optic vesicle	in situ hybridization
ΔNp63 is regulated by BMP4 signaling and is required for early epidermal development in Xenopus. Paper	laevis	1 image	NF stage 17	anterior neural fold, pre-chordal neural plate	in situ hybridization
Tissues and signals involved in the induction of placodal Six1 expression in Xenopus laevis. Paper	laevis	1 image	NF stage 12 to NF stage 12.5	pre-chordal neural plate	in situ hybridization
Yes-associated protein 65 (YAP) expands neural progenitors and regulates Pax3 expression in the neural plate border zone. Paper	laevis	1 image	NF stage 24	olfactory bulb	in situ hybridization
Neural induction in Xenopus requires inhibition of Wnt-beta-catenin signaling. Paper	laevis	1 image	NF stage 14	pre-chordal neural plate border	in situ hybridization
The requirement of histone modification by PRDM12 and Kdm4a for the development of pre-placodal ectoderm and neural crest in... Paper	laevis	1 image	NF stage 15	pre-chordal neural plate	in situ hybridization
The F-box protein Cdc4/Fbxw7 is a novel regulator of neural crest development in Xenopus laevis. Paper	laevis	1 image	NF stage 18 to NF stage 44	lens placode	in situ hybridization
Pa2G4 is a novel Six1 co-factor that is required for neural crest and otic development. Paper	laevis	1 image	NF stage 16	pre-chordal neural plate border	in situ hybridization
Pa2G4 is a novel Six1 co-factor that is required for neural crest and otic development. Paper	laevis	1 image	NF stage 18	pre-chordal neural plate border	in situ hybridization
Adams DS et al. (2016) Assay Paper	laevis	2 images	NF stage 19 to NF stage 28	eye, forebrain, lens, lens placode	in situ hybridization
Tavares ALP et al. (2021) Assay Paper	laevis	1 image	NF stage 16 to NF stage 18	eye primordium	in situ hybridization

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