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Search Criteria

Gene/Clone	Species	Stage	Anatomy Item	Experimenter
six3	xenopus		embryo [+] pronephric nephrostome,pronephric duct,animal blastomere,animal hemisphere,germ plasm,vegetal blastomere,vegetal hemisphere,pronephric nephron,late proximal tubule,early distal tubule,early proximal tubule,late distal tubule,glomus,pronephric sinus,pronephric kidney,primary germ layer,blastomere,embryonic structure,podocyte,early embryonic cell,animal pole,pronephric tubule,vegetal pole,glomeral nexus,proximal tubule,distal tubule,proximal tubule branch,coelom,glomerular mesangial cell,glomerular epithelial cell,germinal granule,prime meridian,Roux spot,fasciculated network of fibrils,germinal vesicle,mitochondrial cloud,oocyte cortex,ooplasm,ring structure,subcortical cytoplasm,vegetal cortex,wedge region,yolk platelet,anatomical group,anatomical region,anatomical space,animal blastomere,blastomere D1,blastomere D1.1,blastomere D1.1.1,blastomere D1.1.2,blastomere D1.2,blastomere D1.2.1,blastomere D1.2.2,blastomere D2,blastomere D2.1,blastomere D2.1.1,blastomere D2.1.2,blastomere D2.2,blastomere D2.2.1,blastomere D2.2.2,blastomere V1,blastomere V1.1,blastomere V1.1.1,blastomere V1.1.2,blastomere V1.2,blastomere V1.2.1,blastomere V1.2.2,blastomere V2,blastomere V2.1,blastomere V2.1.1,blastomere V2.1.2,blastomere V2.2,blastomere V2.2.1,blastomere V2.2.2,egg,embryonic structure,glomeral nexus,mesonephric duct,multicellular anatomical structure,oocyte,polar body,primary oogonium,primary spermatogonium,primordial germ cell,process,secondary oogonium,secondary spermatogonium,spermatid,spermatocyte,spermatozoon,vegetal blastomere

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Expression summary for six3

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Experiment	Species	Images	Stages	Anatomy	Assay
Zaghloul NA and Moody SA (2007) Assay Xenbase Image	laevis	1 image	NF stage 21	anterior neural tube, ciliary marginal zone, diencephalon, eye, optic vesicle, [+] retina	in situ hybridization
Ermakova GV et al. (2007) Assay Paper	laevis	1 image	NF stage 14	neural plate	in situ hybridization
Rorick AM et al. (2007) Assay Paper	xenopus	1 image	NF stage 18 to NF stage 20	eye primordium	in situ hybridization
Zaghloul NA and Moody SA (2007) Assay Paper	laevis	1 image	NF stage 21 to NF stage 37 and 38	eye, eye primordium, oral epithelium, retina, retinal ganglion cell layer	in situ hybridization
Terada K et al. (2006) Assay Paper	xenopus	2 images	NF stage 17 to NF stage 18	eye primordium, neural plate	in situ hybridization
Wang JC and Harris WA (2005) Assay Paper	xenopus	1 image	NF stage 32 to NF stage 41	lens, retina, retinal inner nuclear layer, retinal inner plexiform layer, retinal neural layer, [+] retinal outer plexiform layer	in situ hybridization
Ambrosio AL et al. (2008) Assay Paper	laevis	1 image	NF stage 22	eye primordium, optic vesicle	in situ hybridization
Casarosa S et al. (2005) Assay Paper	xenopus	2 images	NF stage 54 to NF stage 63	ciliary marginal zone, eye, retina, retinal ganglion cell layer, retinal inner nuclear layer, [+] retinal inner plexiform layer, retinal outer nuclear layer, retinal outer plexiform layer	in situ hybridization
Zuber ME et al. (2003) Assay Paper	laevis	1 image	NF stage 12.5 to NF stage 15	eye primordium, neural plate, pre-chordal neural plate	in situ hybridization
Wu HY et al. (2009) Assay Paper	xenopus	2 images	NF stage 15 to NF stage 24	anterior neural fold, diencephalon, eye, eye primordium, forebrain, [+] lens, optic vesicle, pre-chordal neural plate, retina	in situ hybridization
Mamada H et al. (2009) Assay Paper	laevis	1 image	NF stage 13 to NF stage 14	eye primordium, neuroectoderm	in situ hybridization
Murato Y and Hashimoto C (2009) Assay Paper	xenopus	3 images	NF stage 15	anterior neural fold, cement gland primordium, neural plate, pre-chordal neural plate, trigeminal placode	in situ hybridization
Rodríguez-Seguel E et al. (2009) Assay Paper	laevis	2 images	NF stage 14 to NF stage 15	anterior neural fold, anterior neural ridge, anterior placodal area	in situ hybridization
Paper	xenopus	1 image	NF stage 14	eye primordium, neural plate	in situ hybridization
Paper	xenopus	1 image	NF stage 18	eye primordium	in situ hybridization
Cholesterol homeostasis in development: the role of Xenopus 7-dehydrocholesterol reductase (Xdhcr7) in neural development. Paper	laevis	1 image	NF stage 14 to NF stage 32	eye, eye primordium, neuroectoderm, pineal gland	in situ hybridization
Cholesterol homeostasis in development: the role of Xenopus 7-dehydrocholesterol reductase (Xdhcr7) in neural development. Paper	laevis	1 image	NF stage 15 to NF stage 33 and 34	eye, eye primordium, retina	in situ hybridization
Cholesterol homeostasis in development: the role of Xenopus 7-dehydrocholesterol reductase (Xdhcr7) in neural development. Paper	laevis	1 image	NF stage 14 to NF stage 33 and 34	diencephalon, eye, eye primordium, forebrain, neuroectoderm, [+] optic field, pre-chordal neural plate	in situ hybridization
Cholesterol homeostasis in development: the role of Xenopus 7-dehydrocholesterol reductase (Xdhcr7) in neural development. Paper	laevis	1 image	NF stage 14 to NF stage 33 and 34	brain, eye, eye primordium, forebrain	in situ hybridization
Depletion of Bmp2, Bmp4, Bmp7 and Spemann organizer signals induces massive brain formation in Xenopus embryos. Paper	laevis	1 image	NF stage 22 to NF stage 44	eye, forebrain, retina	in situ hybridization
Molecular cloning and embryonic expression of Xenopus Six homeobox genes. Paper	laevis	5 images	NF stage 20 to NF stage 39	diencephalon, eye, eye primordium, forebrain, head mesenchyme, [+] lens placode, midbrain tegmentum, optic vesicle, retina, retinal ganglion cell layer, retinal neural layer, retinal pigmented epithelium	in situ hybridization
Cloning and expression of xSix3, the Xenopus homologue of murine Six3. Paper	laevis	1 image	NF stage 10 to NF stage 32	diencephalon, eye primordium, neural plate, sensorial layer of neurectoderm, telencephalon	in situ hybridization
Neural and head induction by insulin-like growth factor signals. Paper	laevis	1 image	NF stage 17	anterior neural fold, eye primordium, pre-chordal neural plate	in situ hybridization
Alterations of rx1 and pax6 expression levels at neural plate stages differentially affect the production of retinal cell typ... Paper	laevis	1 image	NF stage 20	eye primordium, retina	in situ hybridization
Alterations of rx1 and pax6 expression levels at neural plate stages differentially affect the production of retinal cell typ... Paper	laevis	1 image	NF stage 20	diencephalon, eye primordium, optic vesicle, retina	in situ hybridization
Alterations of rx1 and pax6 expression levels at neural plate stages differentially affect the production of retinal cell typ... Paper	laevis	1 image	NF stage 20	diencephalon, eye primordium, optic vesicle, retina	in situ hybridization
Alterations of rx1 and pax6 expression levels at neural plate stages differentially affect the production of retinal cell typ... Paper	laevis	1 image	NF stage 20	diencephalon, eye primordium, optic vesicle, retina	in situ hybridization
Regulation of ADMP and BMP2/4/7 at opposite embryonic poles generates a self-regulating morphogenetic field. Paper	laevis	1 image	NF stage 20	eye primordium, optic field	in situ hybridization
Olfactory and lens placode formation is controlled by the hedgehog-interacting protein (Xhip) in Xenopus. Paper	laevis	1 image	NF stage 14	eye primordium, neural plate	in situ hybridization
Hairy2-Id3 interactions play an essential role in Xenopus neural crest progenitor specification. Paper	laevis	1 image	NF stage 19	anterior neural fold, optic field, pre-chordal neural plate	in situ hybridization
Hairy2-Id3 interactions play an essential role in Xenopus neural crest progenitor specification. Paper	laevis	1 image	NF stage 19	optic field, pre-chordal neural plate	in situ hybridization
Elkins MB and Henry JJ (2006) Assay Paper	laevis	1 image	NF stage 35 and 36	retina, retinal neural layer	in situ hybridization
Tet3 CXXC Domain and Dioxygenase Activity Cooperatively Regulate Key Genes for Xenopus Eye and Neural Development. Paper	laevis	1 image	NF stage 14	optic field	in situ hybridization
Xu Y et al. (2012) Assay Paper	laevis	1 image	NF stage 19 to NF stage 20	eye primordium, stomodeal-hypophyseal primordium	in situ hybridization
Cholesterol homeostasis in development: the role of Xenopus 7-dehydrocholesterol reductase (Xdhcr7) in neural development. Paper	laevis	1 image	NF stage 14	eye primordium, neuroectoderm, optic field, pre-chordal neural plate	in situ hybridization
Cholesterol homeostasis in development: the role of Xenopus 7-dehydrocholesterol reductase (Xdhcr7) in neural development. Paper	laevis	1 image	NF stage 33 and 34	diencephalon, eye, forebrain, retina	in situ hybridization
A screen for co-factors of Six3. Paper	laevis	1 image	NF stage 17 to NF stage 37 and 38	eye, eye primordium, forebrain, optic field, optic vesicle, [+] pineal gland	in situ hybridization
A screen for co-factors of Six3. Paper	laevis	1 image	NF stage 21 to NF stage 37 and 38	brain, eye, eye primordium, forebrain, midbrain, [+] olfactory region, optic vesicle, pineal gland, retina	in situ hybridization
Perron M et al. (1998) Assay Paper	laevis	1 image	NF stage 40	ciliary marginal zone, retina, retinal inner nuclear layer	in situ hybridization
Crossveinless-2 Is a BMP feedback inhibitor that binds Chordin/BMP to regulate Xenopus embryonic patterning. Paper	laevis	1 image	NF stage 22	optic vesicle	in situ hybridization
Sumoylation controls retinal progenitor proliferation by repressing cell cycle exit in Xenopus laevis. Paper	laevis	1 image	NF stage 32 to NF stage 33 and 34	forebrain, optic vesicle, pineal gland	in situ hybridization
Unexpected activities of Smad7 in Xenopus mesodermal and neural induction. Paper	laevis	1 image	NF stage 20	optic vesicle	in situ hybridization
Henry JJ et al. (2002) Assay Paper	laevis	1 image	NF stage 20 to NF stage 32	ectoderm, lens	in situ hybridization
Xenopus mutant reveals necessity of rax for specifying the eye field which otherwise forms tissue with telencephalic and die... Paper	tropicalis	1 image	NF stage 15 to NF stage 24	eye, eye primordium, optic vesicle, pre-chordal neural plate, retina	in situ hybridization
The requirement of histone modification by PRDM12 and Kdm4a for the development of pre-placodal ectoderm and neural crest in... Paper	laevis	1 image	NF stage 15	anterior placodal area, chordal neural plate, eye primordium	in situ hybridization
Komiya Y et al. (2014) Assay Paper	laevis	1 image	NF stage 26	forebrain, optic tract, optic vesicle, telencephalon	in situ hybridization
Yamamoto A et al. (2005) Assay Paper	laevis	1 image	NF stage 13	anterior neural fold, optic field, pre-chordal neural plate	in situ hybridization
Cizelsky W et al. (2013) Assay Paper	laevis	1 image	NF stage 32	optic vesicle, retina	in situ hybridization
De Marco N et al. (2011) Assay Paper	laevis	1 image	NF stage 19	eye, forebrain, optic vesicle, pre-chordal neural plate, retina	in situ hybridization
NF2/Merlin is required for the axial pattern formation in the Xenopus laevis embryo. Paper	laevis	1 image	NF stage 23 to NF stage 24	diencephalon, forebrain, optic tract, optic vesicle	in situ hybridization

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