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Search Criteria

Gene/Clone	Species	Stage	Anatomy Item	Experimenter
sox2	xenopus		endoderm [+] hypochord,head endoderm,archenteron,archenteron floor,gastrocoel roof plate,post-anal gut,central endoderm,endodermal cell,vegetal endoderm,suprablastoporal endoderm,sub-blastoporal endoderm,dorsal endoderm,pharyngeal endoderm,hindgut primordium,midgut primordium,foregut endoderm,dorsal crest of the endoderm,monociliated cell,archenteron roof midline,left-right organizer primordium,left-right organizer,ventral endoderm,posterior endoderm,anterior endoderm,Roux spot,acinar cell,alpha cell,anterior foregut,anterior hindgut endoderm,antrum,archenteron floor,archenteron roof midline,beta cell,blastopore lip,capillary system of liver,cardia,colon,delta cell,distal stomach,dorsal endoderm,dorsal foregut,dorsal pancreatic bud,dorsal posterior hindgut endoderm,duodenum,enteric neuron,epsilon cell,exocrine pancreas,external coil of the small intestine,fasciculated network of fibrils,first pancreatic bud,foregut epithelium,fundus,gall bladder,gall bladder primordium,gamma cell,gastrocoel roof plate,germinal vesicle,hepato-pancreatic progenitor cell,hepatocyte,hindgut endoderm,ileum,internal coil of the small intestine,intestinal stem cell,islets of Langerhans,left-right organizer,left-right organizer primordium,liver diverticulum,liver parenchyme,liver primordium,lower blastopore lip,lung bud,lung primordium,mitochondrial cloud,monociliated cell,oocyte cortex,ooplasm,post-anal gut,posterior foregut,posterior hindgut endoderm,proximal stomach,pulmonary epithelium,pyloric sphincter,pylorus,rectum,ring structure,second pancreatic bud,stomach,stomach body,stomach epithelium,subcortical cytoplasm,tracheoesophageal fold,tracheoesophageal septum,transient tracheoesophageal septum,upper blastopore lip,vegetal cortex,ventral foregut,ventral posterior hindgut endoderm,wedge region,yolk platelet,anterior endoderm,anterior hindgut endoderm,archenteron,bile duct,biliary tree,blastopore,buccopharyngeal membrane,central endoderm,cloacal sphincter,dorsal endoderm,dorsal pancreatic bud,dorsal posterior hindgut endoderm,egg,first pancreatic bud,foregut,foregut endoderm,foregut epithelium,gall bladder,gall bladder primordium,head endoderm,hepato-pancreatic duct,hepato-pancreatic progenitor cell,hindgut,hindgut endoderm,hindgut primordium,hypochord,islets of Langerhans,large intestine,left-right organizer,liver,liver diverticulum,liver parenchyme,liver primordium,lung,lung bud,lung primordium,midgut,midgut primordium,oocyte,oral evagination,pancreas,pharyngeal cavity,pharyngeal endoderm,pharyngeal pouch,polar body,posterior endoderm,posterior hindgut endoderm,primary oogonium,primary spermatogonium,primordial germ cell,proctodeum,pyloric sphincter,second pancreatic bud,secondary oogonium,secondary spermatogonium,small intestine,spermatid,spermatocyte,spermatozoon,stomach,stomach epithelium,sub-blastoporal endoderm,suprablastoporal endoderm,taste bud,thyroid,thyroid primordium,urostyle,ventral endoderm,ventral pancreatic bud,ventral posterior hindgut endoderm,visceral pouch

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Expression summary for sox2

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Experiment	Species	Images	Stages	Anatomy	Assay
AxelDB CNRS UMR 8080	laevis	2 images	NF stage 10 to NF stage 29 and 30	blastopore lip, endoderm, foregut	in situ hybridization
Damianitsch K et al. (2009) Assay Paper	laevis	2 images	NF stage 40	duodenum, foregut, stomach	in situ hybridization
Paper	laevis	1 image	NF stage 11	upper blastopore lip	in situ hybridization
Expression of the Wnt inhibitor, sFRP5, in the gut endoderm of Xenopus. Paper	laevis	1 image	NF stage 41 to NF stage 46	foregut, hindgut, stomach	in situ hybridization
Xenopus cDNA microarray identification of genes with endodermal organ expression. Paper	laevis	1 image	NF stage 42 to NF stage 45	stomach	in situ hybridization
The pro-BMP activity of Twisted gastrulation is independent of BMP binding. Paper	laevis	1 image	NF stage 42	foregut, visceral pouch	in situ hybridization
Regional gene expression in the epithelia of the Xenopus tadpole gut. Paper	xenopus	1 image	NF stage 41	foregut, hindgut, proctodeum, stomach	in situ hybridization
Expression patterns of genes encoding small GTPases Ras-dva-1 and Ras-dva-2 in the Xenopus laevis tadpoles. Paper	laevis	1 image	NF stage 42 to NF stage 46	gall bladder, proctodeum, stomach	in situ hybridization
Regional gene expression in the epithelia of the Xenopus tadpole gut. Paper	laevis	1 image	NF stage 46 to NF stage 47	pancreas, stomach	in situ hybridization
Suppression of Bmp4 signaling by the zinc-finger repressors Osr1 and Osr2 is required for Wnt/β-catenin-mediated lung specif...	laevis	1 image	NF stage 33 and 34 to NF stage 42	endoderm, stomach	immunohistochemistry
Rankin SA et al. (2012) Assay Paper	laevis	1 image	NF stage 32 to NF stage 42	endoderm, stomach	immunohistochemistry
Rankin SA et al. (2012) Assay Paper	laevis	5 images	NF stage 32 to NF stage 42	endoderm, foregut, stomach	in situ hybridization
Christine KS and Conlon FL (2008) Assay Paper	laevis	1 image	NF stage 29 and 30	pharyngeal pouch	in situ hybridization
Rankin SA et al. (2014) Assay Paper	laevis	1 image	NF stage 32 to NF stage 59	endoderm, foregut, stomach	immunohistochemistry
Rankin SA et al. (2014) Assay Paper	laevis	1 image	NF stage 32 to NF stage 59	endoderm, foregut, lung primordium	in situ hybridization
A Retinoic Acid-Hedgehog Cascade Coordinates Mesoderm-Inducing Signals and Endoderm Competence during Lung Specification. Paper	laevis	1 image	NF stage 33 and 34 to NF stage 35 and 36	foregut	immunohistochemistry
A Retinoic Acid-Hedgehog Cascade Coordinates Mesoderm-Inducing Signals and Endoderm Competence during Lung Specification. Paper	laevis	1 image	NF stage 33 and 34 to NF stage 35 and 36	foregut	in situ hybridization
Genomic integration of Wnt/β-catenin and BMP/Smad1 signaling coordinates foregut and hindgut transcriptional programs. Paper	laevis	1 image	NF stage 35 and 36	foregut	in situ hybridization
Timing is everything: Reiterative Wnt, BMP and RA signaling regulate developmental competence during endoderm organogenesis. Paper	laevis	1 image	NF stage 33 and 34 to NF stage 37 and 38	dorsal foregut, endoderm	immunohistochemistry
Timing is everything: Reiterative Wnt, BMP and RA signaling regulate developmental competence during endoderm organogenesis. Paper	laevis	1 image	NF stage 33 and 34 to NF stage 37 and 38	endoderm, foregut	in situ hybridization
Nasr T et al. (2019) Assay	laevis	1 image	NF stage 35 and 36 to NF stage 42	dorsal foregut, tracheoesophageal fold	immunohistochemistry

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