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Search Criteria

Gene/Clone	Species	Stage	Anatomy Item	Experimenter
sox9	xenopus		brain [+] forebrain,telencephalon,diencephalon,midbrain,hindbrain,midbrain-hindbrain boundary,hypophysis,ventricular zone,pineal gland,optic stalk,cerebellum,fourth ventricle,medulla oblongata,optic tectum,hypothalamus,optic chiasm,suprachiasmatic nucleus,rhombomere,optic tract,rhombic lip,metencephalic artery,metencephalic vein,mesencephalic artery,mesencephalic vein,olfactory bulb,infundibulum,ventral tegmentum,dorsal tegmentum,anterior hypothalamus,posterior hypothalamus,lateral ganglionic eminence,subpallium,medial ganglionic eminence,midbrain tegmentum,eminentia thalami,pallium,pretectum,prethalamus,zona limitans intrathalamica,thalamus,oculomotor motornucleus,dorsal thalamus,trochlear motornucleus,anterior tectum,posterior tectum,accessory olfactory bulb,amygdala,anterior amygdala,anterior commissure,anterior entopeduncular nucleus,anterior thalamic nucleus,anterodorsal tegmental nucleus,anteroventral tegmental nucleus,basal forebrain,basal ganglion,bed nucleus of the stria terminalis,central amygdala,central nucleus of the thalamus,dorsal column nucleus,dorsal habenular nucleus,dorsal pallidum,dorsal pallium,dorsal septum,external plexiform layer of the olfactory bulb,glomerular layer of the olfactory bulb,granule cell,granule cell layer of the cerebellum,granule cell layer of the olfactory bulb,habenula,isthmic nucleus,lateral amygdala,lateral forebrain bundle,lateral hypothalamic nucleus,lateral pallium,lateral septum,laterodorsal tegmental nucleus,locus coeruleus,magnocellular preoptic nucleus,medial amygdala,medial pallium,medial septum,mitral cell,mitral cell layer of the olfactory bulb,nucleus accumbens,nucleus of the diagonal band,pallidum,posterior commissure,posterodorsal tegmental nucleus,posteroventral tegmental nucleus,preoptic area,raphe nucleus,telencephalon septum,solitary tract,striatum,subcommissural organ,subthalamic nucleus,torus semicircularis,ventral habenular nucleus,ventral hypothalamic nucleus,ventral pallidum,ventral pallium,ventrolateral thalamic nucleus,ventromedial thalamic nucleus,prosomere,prosomere 4,prosomere 5,prosomere 6,brain ventricle,mammilary region,tuberal region,third ventricle,forebrain-midbrain boundary,ventricular layer of the optic tectum,neuropil of the optic tectum,cell body layer of the optic tectum,radial glial cell,neural stem cell,Mauthner cell,caudal tuberal region,rostral tuberal region,nucleus of the solitary tract,prethalamus basal plate,retromammillary area,nucleus reticularis medialis,nucleus reticularis superior,nucleus reticularis inferior,ventral septum,supraoptoparaventricular region,stria terminalis,anterior entopeduncular region,astrocyte,oligodendrocyte,astrocyte end-foot,melanotrope,adenohypophysis,neurohypophysis,pars distalis,pars nervosa,pars intermedia,dorsal telencephalon,pial cell,pia mater

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Expression summary for sox9

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Experiment	Species	Images	Stages	Anatomy	Assay
Harland lab in situ screen Assay Harland lab in situ screen	tropicalis	1 image	NF stage 25	brain	in situ hybridization
O'Donnell M et al. (2006) Assay Paper	laevis	1 image	NF stage 35 and 36	brain, forebrain, midbrain	in situ hybridization
Light W et al. (2005) Assay Paper	xenopus	1 image	NF stage 28	forebrain, pineal gland	in situ hybridization
Harland Lab Assay Harland Lab	tropicalis	2 images	NF stage 25 to NF stage 33 and 34	brain, forebrain, hindbrain, midbrain, pineal gland	in situ hybridization
Paper	laevis	1 image	NF stage 22 to NF stage 24	forebrain	in situ hybridization
Paper	laevis	1 image	NF stage 27 to NF stage 40	brain, hindbrain, midbrain-hindbrain boundary, pineal gland	in situ hybridization
Serotonin 2B receptor signaling is required for craniofacial morphogenesis and jaw joint formation in Xenopus. Paper	laevis	1 image	NF stage 26	brain, forebrain, hindbrain, rhombomere	in situ hybridization
Mustn1 is essential for craniofacial chondrogenesis during Xenopus development. Paper	laevis	1 image	NF stage 40	brain	in situ hybridization
Serotonin 2B receptor signaling is required for craniofacial morphogenesis and jaw joint formation in Xenopus. Paper	laevis	1 image	NF stage 28	midbrain	in situ hybridization
The protein kinase MLTK regulates chondrogenesis by inducing the transcription factor Sox6. Paper	laevis	1 image	NF stage 35 and 36 to NF stage 41	brain, forebrain, hindbrain, midbrain, rhombomere	in situ hybridization
Functional analysis of Sox8 during neural crest development in Xenopus. Paper	laevis	1 image	NF stage 24	brain, forebrain, midbrain	in situ hybridization
Rankin SA et al. (2014) Assay Paper	laevis	1 image	NF stage 35 and 36	brain	in situ hybridization
Tae HJ et al. (2015) Assay Paper	laevis	1 image	NF stage 26 to NF stage 35 and 36	brain	in situ hybridization
Patient Lab	laevis	1 image	NF stage 29 and 30	brain, forebrain, midbrain	in situ hybridization
Identifying domains of EFHC1 involved in ciliary localization, ciliogenesis, and the regulation of Wnt signaling. Paper	laevis	1 image	NF stage 25	brain	in situ hybridization
Devotta A et al. (2016) Assay Paper	laevis	1 image	NF stage 28	brain	in situ hybridization
Sox9 function in craniofacial development and disease. Paper	laevis	2 images	NF stage 20 to NF stage 28	brain	in situ hybridization
Pa2G4 is a novel Six1 co-factor that is required for neural crest and otic development. Paper	laevis	1 image	NF stage 28	midbrain, pineal gland	in situ hybridization
Timing is everything: Reiterative Wnt, BMP and RA signaling regulate developmental competence during endoderm organogenesis. Paper	laevis	1 image	NF stage 37 and 38	brain	in situ hybridization
PFKFB4 control of AKT signaling is essential for premigratory and migratory neural crest formation. Paper	laevis	1 image	NF stage 26	forebrain	in situ hybridization
Six1 proteins with human branchio-oto-renal mutations differentially affect cranial gene expression and otic development. Paper	laevis	1 image	NF stage 28 to NF stage 32	brain	in situ hybridization
Using Xenopus to analyze neurocristopathies like Kabuki syndrome. Paper	laevis	1 image	NF stage 29 and 30	brain	in situ hybridization

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