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Search Criteria

Gene/Clone	Species	Stage	Anatomy Item	Experimenter
sox9	xenopus		central nervous system [+] lower eyelid,lens,retina,brain,forebrain,telencephalon,diencephalon,midbrain,hindbrain,midbrain-hindbrain boundary,hypophysis,spinal cord,ventricular zone,roof plate,ciliary marginal zone,chordoneural hinge,posterior wall of neurenteric canal,pineal gland,eye,cornea,globe,conjunctiva,sclera,iris,ciliary body,optic nerve,lens placode,posterior neural tube,pupil,floor plate,anterior neural tube,choroid fissure,optic stalk,cerebellum,fourth ventricle,medulla oblongata,neural tube,photoreceptor layer,retinal neural layer,retinal pigmented epithelium,retinal outer plexiform layer,retinal outer nuclear layer,optic fiber layer,retinal inner nuclear layer,inner limiting membrane,retinal ganglion cell layer,outer limiting membrane,retinal inner plexiform layer,optic tectum,hypothalamus,optic chiasm,suprachiasmatic nucleus,rhombomere,presumptive midbrain-hindbrain boundary,lens epithelium,lens transitional zone,lens fiber cell mass,horizontal cell,bipolar neuron,amacrine cell,retinal ganglion cell,optic tract,eye photoreceptor cell,rhombic lip,metencephalic artery,metencephalic vein,mesencephalic artery,mesencephalic vein,olfactory bulb,infundibulum,ventral tegmentum,dorsal tegmentum,anterior hypothalamus,posterior hypothalamus,lateral ganglionic eminence,subpallium,medial ganglionic eminence,midbrain tegmentum,eminentia thalami,pallium,pretectum,prethalamus,zona limitans intrathalamica,thalamus,retinal stem cell region,retinal progenitor cell region,oculomotor motornucleus,dorsal thalamus,trochlear motornucleus,central retina,peripheral retina,choroid,retinal stem cell,retinal progenitor cell,anterior tectum,posterior tectum,accessory olfactory bulb,amygdala,anterior amygdala,anterior commissure,anterior entopeduncular nucleus,ventral funiculus,anterior thalamic nucleus,anterodorsal tegmental nucleus,anteroventral tegmental nucleus,basal forebrain,basal ganglion,bed nucleus of the stria terminalis,central amygdala,central canal,central nucleus of the thalamus,dorsal column nucleus,dorsal habenular nucleus,dorsal pallidum,dorsal pallium,dorsal septum,external plexiform layer of the olfactory bulb,glomerular layer of the olfactory bulb,granule cell,granule cell layer of the cerebellum,granule cell layer of the olfactory bulb,habenula,isthmic nucleus,lateral amygdala,lateral forebrain bundle,lateral funiculus,lateral hypothalamic nucleus,lateral pallium,lateral septum,laterodorsal tegmental nucleus,locus coeruleus,magnocellular preoptic nucleus,medial amygdala,medial pallium,medial septum,mitral cell,mitral cell layer of the olfactory bulb,nucleus accumbens,nucleus of the diagonal band,pallidum,posterior commissure,dorsal funiculus,posterodorsal tegmental nucleus,posteroventral tegmental nucleus,preoptic area,raphe nucleus,telencephalon septum,solitary tract,striatum,subcommissural organ,subthalamic nucleus,torus semicircularis,ventral habenular nucleus,ventral hypothalamic nucleus,ventral pallidum,ventral pallium,ventrolateral thalamic nucleus,ventromedial thalamic nucleus,neuromere,prosomere,prosomere 4,prosomere 5,prosomere 6,brain ventricle,mammilary region,tuberal region,third ventricle,neural nucleus,ventrolateral neural tube,dorsolateral neural tube,Muller cell,spinal neuron,forebrain-midbrain boundary,ventricular layer of the optic tectum,neuropil of the optic tectum,cell body layer of the optic tectum,radial glial cell,neural stem cell,Mauthner cell,caudal tuberal region,rostral tuberal region,nucleus of the solitary tract,prethalamus basal plate,retromammillary area,nucleus reticularis medialis,nucleus reticularis superior,nucleus reticularis inferior,ventral septum,supraoptoparaventricular region,stria terminalis,optic disc,sulcus limitans of neural tube,anterior entopeduncular region,astrocyte,oligodendrocyte,astrocyte end-foot,melanotrope,adenohypophysis,neurohypophysis,pars distalis,pars nervosa,pars intermedia,dorsal telencephalon,neurenteric canal,pial cell,pia mater,cerebrospinal fluid,Mauthner cell,accessory olfactory bulb,adenohypophysis,amygdala,anterior amygdala,anterior commissure,anterior entopeduncular nucleus,anterior entopeduncular region,anterior hypothalamus,anterior tectum,anterior thalamic nucleus,anterodorsal tegmental nucleus,anteroventral tegmental nucleus,astrocyte,astrocyte end-foot,basal forebrain,basal ganglion,bed nucleus of the stria terminalis,brain ventricle,caudal tuberal region,cell body layer of the optic tectum,central amygdala,central canal,central nucleus of the thalamus,cerebellum,diencephalon,dorsal column nucleus,dorsal funiculus,dorsal habenular nucleus,dorsal pallidum,dorsal pallium,dorsal septum,dorsal tegmentum,dorsal telencephalon,dorsal thalamus,eminentia thalami,external plexiform layer of the olfactory bulb,floor plate,forebrain,forebrain-midbrain boundary,fourth ventricle,glomerular layer of the olfactory bulb,granule cell,granule cell layer of the cerebellum,granule cell layer of the olfactory bulb,habenula,hindbrain,hypophysis,hypothalamus,infundibulum,isthmic nucleus,lateral amygdala,lateral forebrain bundle,lateral funiculus,lateral ganglionic eminence,lateral hypothalamic nucleus,lateral pallium,lateral septum,laterodorsal tegmental nucleus,lens epithelium,lens fiber cell mass,lens transitional zone,locus coeruleus,magnocellular preoptic nucleus,mammilary region,medial amygdala,medial ganglionic eminence,medial pallium,medial septum,medulla oblongata,melanotrope,mesencephalic artery,mesencephalic vein,metencephalic artery,metencephalic vein,midbrain,midbrain tegmentum,midbrain-hindbrain boundary,mitral cell,mitral cell layer of the olfactory bulb,neural stem cell,neurohypophysis,neuropil of the optic tectum,nucleus accumbens,nucleus of the diagonal band,nucleus of the solitary tract,nucleus reticularis inferior,nucleus reticularis medialis,nucleus reticularis superior,oculomotor motornucleus,olfactory bulb,oligodendrocyte,optic chiasm,optic stalk,optic tectum,optic tract,pallidum,pallium,pars distalis,pars intermedia,pars nervosa,pia mater,pial cell,pineal gland,posterior commissure,posterior hypothalamus,posterior tectum,posterodorsal tegmental nucleus,posteroventral tegmental nucleus,preoptic area,pretectum,prethalamus,prethalamus basal plate,prosomere,prosomere 4,prosomere 5,prosomere 6,radial glial cell,raphe nucleus,retromammillary area,rhombic lip,rhombomere,roof plate,rostral tuberal region,solitary tract,spinal neuron,stria terminalis,striatum,subcommissural organ,subpallium,subthalamic nucleus,suprachiasmatic nucleus,supraoptoparaventricular region,telencephalon,telencephalon septum,thalamus,third ventricle,torus semicircularis,trochlear motornucleus,tuberal region,ventral funiculus,ventral habenular nucleus,ventral hypothalamic nucleus,ventral pallidum,ventral pallium,ventral septum,ventral tegmentum,ventricular layer of the optic tectum,ventricular zone,ventrolateral thalamic nucleus,ventromedial thalamic nucleus,zona limitans intrathalamica,Stirnorgan,amygdala,astrocyte,astrocyte end-foot,basal forebrain,basal ganglion,brain,forebrain,hindbrain,lens,midbrain,midbrain-hindbrain boundary,neurohypophysis,nucleus of the diagonal band,oligodendrocyte,optic nerve,optic tectum,pallidum,radial glial cell,spinal cord,striatum,telencephalon septum

Too many results?Too few results?

Expression summary for sox9

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Experiment	Species	Images	Stages	Anatomy	Assay
Harland lab in situ screen Assay Harland lab in situ screen	tropicalis	1 image	NF stage 25	brain	in situ hybridization
O'Donnell M et al. (2006) Assay Paper	laevis	1 image	NF stage 35 and 36	brain, forebrain, midbrain	in situ hybridization
Light W et al. (2005) Assay Paper	xenopus	1 image	NF stage 28	eye, forebrain, pineal gland	in situ hybridization
Harland Lab Assay Harland Lab	tropicalis	2 images	NF stage 25 to NF stage 33 and 34	brain, eye, forebrain, hindbrain, lens placode, [+] midbrain, pineal gland	in situ hybridization
Paper	laevis	1 image	NF stage 22 to NF stage 24	eye, forebrain	in situ hybridization
Paper	laevis	1 image	NF stage 27 to NF stage 40	brain, hindbrain, midbrain-hindbrain boundary, pineal gland	in situ hybridization
Serotonin 2B receptor signaling is required for craniofacial morphogenesis and jaw joint formation in Xenopus. Paper	laevis	1 image	NF stage 26	brain, eye, forebrain, hindbrain, rhombomere	in situ hybridization
Paraxial T-box genes, Tbx6 and Tbx1, are required for cranial chondrogenesis and myogenesis. Paper	xenopus	1 image	NF stage 27	lens placode	in situ hybridization
Runx2 is essential for larval hyobranchial cartilage formation in Xenopus laevis. Paper	laevis	1 image	NF stage 33 and 34	eye	in situ hybridization
Mustn1 is essential for craniofacial chondrogenesis during Xenopus development. Paper	laevis	1 image	NF stage 40	brain, spinal cord	in situ hybridization
Serotonin 2B receptor signaling is required for craniofacial morphogenesis and jaw joint formation in Xenopus. Paper	laevis	1 image	NF stage 28	eye, midbrain	in situ hybridization
Sox10 regulates the development of neural crest-derived melanocytes in Xenopus. Paper	laevis	1 image	NF stage 32	eye	in situ hybridization
RIPPLY3 is a retinoic acid-inducible repressor required for setting the borders of the pre-placodal ectoderm. Paper	laevis	1 image	NF stage 32	lens	in situ hybridization
The protein kinase MLTK regulates chondrogenesis by inducing the transcription factor Sox6. Paper	laevis	1 image	NF stage 35 and 36 to NF stage 41	brain, eye, forebrain, hindbrain, midbrain, [+] rhombomere	in situ hybridization
Functional analysis of Sox8 during neural crest development in Xenopus. Paper	laevis	1 image	NF stage 24	brain, forebrain, midbrain	in situ hybridization
Sox9, a novel pancreatic marker in Xenopus. Paper	laevis	1 image	NF stage 35 and 36	floor plate, spinal cord	in situ hybridization
Rankin SA et al. (2014) Assay Paper	laevis	1 image	NF stage 35 and 36	brain, eye	in situ hybridization
A gene expression map of the larval Xenopus laevis head reveals developmental changes underlying the evolution of new skelet... Paper	laevis	1 image	NF stage 33 and 34	eye	in situ hybridization
Tae HJ et al. (2015) Assay Paper	laevis	1 image	NF stage 26 to NF stage 35 and 36	brain, eye	in situ hybridization
Griffin JN et al. (2015) Assay Paper	tropicalis	1 image	NF stage 28	eye, retina	in situ hybridization
Patient Lab	laevis	1 image	NF stage 29 and 30	brain, eye, forebrain, midbrain	in situ hybridization
Identifying domains of EFHC1 involved in ciliary localization, ciliogenesis, and the regulation of Wnt signaling. Paper	laevis	1 image	NF stage 25	brain	in situ hybridization
Devotta A et al. (2016) Assay Paper	laevis	1 image	NF stage 28	brain	in situ hybridization
Sox9 function in craniofacial development and disease. Paper	laevis	2 images	NF stage 20 to NF stage 28	brain, eye	in situ hybridization
Pa2G4 is a novel Six1 co-factor that is required for neural crest and otic development. Paper	laevis	1 image	NF stage 28	eye, midbrain, pineal gland, retina	in situ hybridization
Timing is everything: Reiterative Wnt, BMP and RA signaling regulate developmental competence during endoderm organogenesis. Paper	laevis	1 image	NF stage 37 and 38	brain, eye	in situ hybridization
PFKFB4 control of AKT signaling is essential for premigratory and migratory neural crest formation. Paper	laevis	1 image	NF stage 26	forebrain	in situ hybridization
Six1 proteins with human branchio-oto-renal mutations differentially affect cranial gene expression and otic development. Paper	laevis	1 image	NF stage 28 to NF stage 32	brain, eye	in situ hybridization
Sullivan CH et al. (2019) Assay Paper	laevis	2 images	NF stage 24 to NF stage 28	eye	in situ hybridization
Using Xenopus to analyze neurocristopathies like Kabuki syndrome. Paper	laevis	1 image	NF stage 29 and 30	brain, eye, lens	in situ hybridization
Xenopus tropicalis xtbs plasmid library Unigene tropicalis cDNA library	tropicalis		NF stage 58 to NF stage 64	central nervous system	cDNA Library

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