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Search Criteria

Gene/Clone	Species	Stage	Anatomy Item	Experimenter
sox9	xenopus		pre-chordal neural plate [+] anterior neural fold,optic field,pre-chordal neural plate border,Muller cell,accessory olfactory bulb,adenohypophysis,amacrine cell,amygdala,anterior amygdala,anterior commissure,anterior entopeduncular nucleus,anterior entopeduncular region,anterior hypothalamus,anterior tectum,anterior thalamic nucleus,anterodorsal tegmental nucleus,anteroventral tegmental nucleus,basal forebrain,basal ganglion,bed nucleus of the stria terminalis,bipolar neuron,caudal tuberal region,cell body layer of the optic tectum,central amygdala,central nucleus of the thalamus,central retina,choroid,choroid fissure,ciliary body,ciliary marginal zone,conjunctiva,cornea,diencephalon,dorsal habenular nucleus,dorsal pallidum,dorsal pallium,dorsal septum,dorsal tegmentum,dorsal telencephalon,dorsal thalamus,eminentia thalami,external plexiform layer of the olfactory bulb,eye photoreceptor cell,globe,glomerular layer of the olfactory bulb,granule cell,granule cell layer of the olfactory bulb,habenula,horizontal cell,hypophysis,hypothalamus,infundibulum,inner limiting membrane,iris,lateral amygdala,lateral forebrain bundle,lateral ganglionic eminence,lateral hypothalamic nucleus,lateral pallium,lateral septum,laterodorsal tegmental nucleus,lens,lens epithelium,lens fiber cell mass,lens placode,lens transitional zone,lower eyelid,magnocellular preoptic nucleus,mammilary region,medial amygdala,medial ganglionic eminence,medial pallium,medial septum,melanotrope,mesencephalic artery,mesencephalic vein,midbrain tegmentum,mitral cell,mitral cell layer of the olfactory bulb,neurohypophysis,neuropil of the optic tectum,nucleus accumbens,nucleus of the diagonal band,oculomotor motornucleus,olfactory bulb,optic chiasm,optic disc,optic fiber layer,optic nerve,optic stalk,optic tectum,optic tract,outer limiting membrane,pallidum,pallium,pars distalis,pars intermedia,pars nervosa,peripheral retina,photoreceptor layer,pigment layer,pineal gland,posterior commissure,posterior hypothalamus,posterior tectum,posterodorsal tegmental nucleus,posteroventral tegmental nucleus,preoptic area,pretectum,prethalamus,prethalamus basal plate,prosomere,prosomere 4,prosomere 5,prosomere 6,pupil,radial glial cell,retina,retinal ganglion cell,retinal ganglion cell layer,retinal inner nuclear layer,retinal inner plexiform layer,retinal layer,retinal neural layer,retinal outer nuclear layer,retinal outer plexiform layer,retinal pigmented epithelium,retinal progenitor cell,retinal progenitor cell region,retinal stem cell,retinal stem cell region,retromammillary area,rostral tuberal region,sclera,striatum,subcommissural organ,subpallium,subthalamic nucleus,suprachiasmatic nucleus,supraoptoparaventricular region,telencephalon,telencephalon septum,thalamus,third ventricle,torus semicircularis,trochlear motornucleus,tuberal region,ventral habenular nucleus,ventral hypothalamic nucleus,ventral pallidum,ventral pallium,ventral septum,ventral tegmentum,ventricular layer of the optic tectum,ventrolateral thalamic nucleus,ventromedial thalamic nucleus,zona limitans intrathalamica,anterior neural tube,choroid fissure,eye,eye primordium,forebrain,iris,midbrain,optic nerve,optic stalk,optic tectum,optic vesicle

Too many results?Too few results?

Expression summary for sox9

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Experiment	Species	Images	Stages	Anatomy	Assay
Saint-Germain N et al. (2004) Assay Paper	xenopus	1 image	NF stage 22 to NF stage 44	optic vesicle	in situ hybridization
O'Donnell M et al. (2006) Assay Paper	laevis	1 image	NF stage 25 to NF stage 35 and 36	forebrain, midbrain, optic vesicle	in situ hybridization
Abu-Elmagd M et al. (2009) Assay Paper	laevis	1 image	NF stage 18	eye primordium	in situ hybridization
Light W et al. (2005) Assay Paper	xenopus	1 image	NF stage 28	eye, forebrain, optic vesicle, pineal gland	in situ hybridization
Spokony RF et al. (2002) Assay Paper	laevis	1 image	NF stage 12 to NF stage 25	optic vesicle, pre-chordal neural plate	in situ hybridization
Harland Lab Assay Harland Lab	tropicalis	2 images	NF stage 25 to NF stage 33 and 34	eye, forebrain, lens placode, midbrain, pineal gland	in situ hybridization
Paper	laevis	1 image	NF stage 22 to NF stage 24	eye, forebrain	in situ hybridization
Paper	laevis	1 image	NF stage 24 to NF stage 40	eye primordium, optic vesicle, pineal gland	in situ hybridization
Serotonin 2B receptor signaling is required for craniofacial morphogenesis and jaw joint formation in Xenopus. Paper	laevis	1 image	NF stage 26	eye, forebrain	in situ hybridization
Paraxial T-box genes, Tbx6 and Tbx1, are required for cranial chondrogenesis and myogenesis. Paper	laevis	1 image	NF stage 27	optic vesicle	in situ hybridization
Paraxial T-box genes, Tbx6 and Tbx1, are required for cranial chondrogenesis and myogenesis. Paper	xenopus	1 image	NF stage 27	lens placode	in situ hybridization
Runx2 is essential for larval hyobranchial cartilage formation in Xenopus laevis. Paper	laevis	1 image	NF stage 33 and 34	eye	in situ hybridization
Serotonin 2B receptor signaling is required for craniofacial morphogenesis and jaw joint formation in Xenopus. Paper	laevis	1 image	NF stage 28	eye, midbrain	in situ hybridization
Sox10 regulates the development of neural crest-derived melanocytes in Xenopus. Paper	laevis	1 image	NF stage 32	eye	in situ hybridization
RIPPLY3 is a retinoic acid-inducible repressor required for setting the borders of the pre-placodal ectoderm. Paper	laevis	1 image	NF stage 32	lens	in situ hybridization
The protein kinase MLTK regulates chondrogenesis by inducing the transcription factor Sox6. Paper	laevis	1 image	NF stage 35 and 36 to NF stage 41	eye, forebrain, midbrain, optic field	in situ hybridization
Functional analysis of Sox8 during neural crest development in Xenopus. Paper	laevis	1 image	NF stage 24	forebrain, midbrain, optic field	in situ hybridization
Neural induction in Xenopus requires inhibition of Wnt-beta-catenin signaling. Paper	laevis	1 image	NF stage 20	pre-chordal neural plate border	in situ hybridization
Rankin SA et al. (2014) Assay Paper	laevis	1 image	NF stage 35 and 36	eye	in situ hybridization
A gene expression map of the larval Xenopus laevis head reveals developmental changes underlying the evolution of new skelet... Paper	laevis	1 image	NF stage 33 and 34	eye	in situ hybridization
Tae HJ et al. (2015) Assay Paper	laevis	1 image	NF stage 26 to NF stage 32	eye	in situ hybridization
Griffin JN et al. (2015) Assay Paper	tropicalis	1 image	NF stage 28	eye, optic vesicle, retina	in situ hybridization
Patient Lab	laevis	1 image	NF stage 29 and 30	eye, forebrain, midbrain	in situ hybridization
Macrì S et al. (2016) Assay Paper	laevis	1 image	NF stage 28	optic vesicle, retinal layer	in situ hybridization
Sox9 function in craniofacial development and disease. Paper	laevis	2 images	NF stage 20 to NF stage 28	eye	in situ hybridization
Pa2G4 is a novel Six1 co-factor that is required for neural crest and otic development. Paper	laevis	1 image	NF stage 14	optic field	in situ hybridization
Pa2G4 is a novel Six1 co-factor that is required for neural crest and otic development. Paper	laevis	1 image	NF stage 28	eye, midbrain, pineal gland, retina	in situ hybridization
Timing is everything: Reiterative Wnt, BMP and RA signaling regulate developmental competence during endoderm organogenesis. Paper	laevis	1 image	NF stage 37 and 38	eye	in situ hybridization
PFKFB4 control of AKT signaling is essential for premigratory and migratory neural crest formation. Paper	laevis	1 image	NF stage 26	forebrain, optic vesicle	in situ hybridization
Six1 proteins with human branchio-oto-renal mutations differentially affect cranial gene expression and otic development. Paper	laevis	1 image	NF stage 28 to NF stage 32	eye	in situ hybridization
Sullivan CH et al. (2019) Assay Paper	laevis	2 images	NF stage 24 to NF stage 28	eye	in situ hybridization
Using Xenopus to analyze neurocristopathies like Kabuki syndrome. Paper	laevis	1 image	NF stage 29 and 30	eye, lens	in situ hybridization

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