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Gene/Clone	Species	Stage	Anatomy Item	Experimenter
foxd4l1.1	xenopus		embryo [+] pronephric nephrostome,pronephric duct,animal blastomere,animal hemisphere,germ plasm,vegetal blastomere,vegetal hemisphere,pronephric nephron,late proximal tubule,early distal tubule,early proximal tubule,late distal tubule,glomus,pronephric sinus,pronephric kidney,primary germ layer,blastomere,embryonic structure,podocyte,early embryonic cell,animal pole,pronephric tubule,vegetal pole,glomeral nexus,proximal tubule,distal tubule,proximal tubule branch,coelom,glomerular mesangial cell,glomerular epithelial cell,germinal granule,prime meridian,Roux spot,fasciculated network of fibrils,germinal vesicle,mitochondrial cloud,oocyte cortex,ooplasm,ring structure,subcortical cytoplasm,vegetal cortex,wedge region,yolk platelet,anatomical group,anatomical region,anatomical space,animal blastomere,blastomere D1,blastomere D1.1,blastomere D1.1.1,blastomere D1.1.2,blastomere D1.2,blastomere D1.2.1,blastomere D1.2.2,blastomere D2,blastomere D2.1,blastomere D2.1.1,blastomere D2.1.2,blastomere D2.2,blastomere D2.2.1,blastomere D2.2.2,blastomere V1,blastomere V1.1,blastomere V1.1.1,blastomere V1.1.2,blastomere V1.2,blastomere V1.2.1,blastomere V1.2.2,blastomere V2,blastomere V2.1,blastomere V2.1.1,blastomere V2.1.2,blastomere V2.2,blastomere V2.2.1,blastomere V2.2.2,egg,embryonic structure,glomeral nexus,mesonephric duct,multicellular anatomical structure,oocyte,polar body,primary oogonium,primary spermatogonium,primordial germ cell,process,secondary oogonium,secondary spermatogonium,spermatid,spermatocyte,spermatozoon,vegetal blastomere

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Expression summary for foxd4l1.1

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Experiment	Species	Images	Stages	Anatomy	Assay
Harland lab in situ screen Assay Harland lab in situ screen	tropicalis	1 image	NF stage 26	presomitic mesoderm, tail bud	in situ hybridization
Harland Lab Assay Harland Lab	tropicalis	1 image	NF stage 24	brain, caudal presomitic mesoderm, midbrain	in situ hybridization
Paper	xenopus	1 image	NF stage 11	epidermis, neuroectoderm	in situ hybridization
The competence of Xenopus blastomeres to produce neural and retinal progeny is repressed by two endo-mesoderm promoting pathw... Paper	laevis	1 image	NF stage 10 to NF stage 12.5	neuroectoderm	in situ hybridization
Neuroectodermal specification and regionalization of the Spemann organizer in Xenopus. Paper	xenopus	2 images	NF stage 9 to NF stage 25	chordoneural hinge, circumblastoporal collar, dorsal marginal zone, floor plate, neural plate, [+] posterior wall of neurenteric canal, tail bud	in situ hybridization
Genomic analysis of Xenopus organizer function. Paper	laevis	1 image	NF stage 10.5 to NF stage 11.5	dorsal marginal zone, involuted dorsal mesoderm	in situ hybridization
Sölter M et al. (1999) Assay Paper	laevis	2 images	NF stage 10 to NF stage 31	axial mesoderm, chordoneural hinge, circumblastoporal collar, dorsal marginal zone, involuted dorsal mesoderm, [+] prechordal plate, presumptive midbrain-hindbrain boundary, tail bud, upper blastopore lip	in situ hybridization
Chen JA et al. (2005) Assay Paper	tropicalis	1 image	NF stage 11 to NF stage 29 and 30	anterior dorsal lateral plate region, branchial arch, dorsal marginal zone, eye, intersomitic region, [+] otic vesicle, roof plate, spinal cord, tail bud	in situ hybridization
AP-1(c-Jun/FosB) mediates xFoxD5b expression in Xenopus early developmental neurogenesis. Paper	laevis	2 images	NF stage 11	dorsal marginal zone, involuted dorsal mesoderm, mesoderm	in situ hybridization
Janesick A et al. (2013) Assay Paper	laevis	1 image	NF stage 14	neural plate	in situ hybridization
Peyrot SM et al. (2011) Assay Paper	laevis	1 image	NF stage 10.5 to NF stage 14	dorsal marginal zone, floor plate, neural plate, neural tube, notochord	in situ hybridization
Nicetto D et al. (2013) Assay Paper	laevis	1 image	NF stage 11	dorsal marginal zone	in situ hybridization
Neural transcription factors bias cleavage stage blastomeres to give rise to neural ectoderm. Paper	laevis	1 image	NF stage 6 (32-cell)	animal blastomere, embryo, vegetal blastomere	in situ hybridization
Pohl BS and Knöchel W (2005) Assay Paper	laevis	1 image	NF stage 1 to NF stage 35 and 36	chordoneural hinge, dorsal marginal zone, ectoderm, neural groove, neural plate, [+] roof plate, spinal cord, tail bud	in situ hybridization
A downstream enhancer is essential for Xenopus FoxD5 transcription. Paper	tropicalis	1 image	NF stage 11 to NF stage 37 and 38	chordoneural hinge, dorsal marginal zone, floor plate, midbrain, neural tube, [+] otic vesicle, spinal cord, tail bud	in situ hybridization
On becoming neural: what the embryo can tell us about differentiating neural stem cells. Paper	laevis	1 image	NF stage 11	marginal zone, neuroectoderm	in situ hybridization
Brg1 chromatin remodeling ATPase balances germ layer patterning by amplifying the transcriptional burst at midblastula trans... Paper	laevis	1 image	NF stage 11	blastocoel roof, mesoderm	in situ hybridization
Lineage commitment of embryonic cells involves MEK1-dependent clearance of pluripotency regulator Ventx2. Paper	laevis	1 image	NF stage 10.5	dorsal marginal zone, mesoderm	in situ hybridization
Lineage commitment of embryonic cells involves MEK1-dependent clearance of pluripotency regulator Ventx2. Paper	laevis	1 image	NF stage 10.5	non-involuting marginal zone	in situ hybridization
Wbp2nl has a developmental role in establishing neural and non-neural ectodermal fates. Paper	laevis	1 image	NF stage 11	neuroectoderm	in situ hybridization
Marchak A et al. (2017) Assay Paper	laevis	1 image	NF stage 11	neuroectoderm	in situ hybridization
PV.1 Suppresses the Expression of FoxD5b during Neural Induction in Xenopus Embryos. Paper	laevis	1 image	NF stage 10	dorsal marginal zone	in situ hybridization
Nodal/Activin Pathway is a Conserved Neural Induction Signal in Chordates. Paper	laevis	1 image	NF stage 13	neural plate, neuroectoderm	in situ hybridization
Characterization of a subfamily of related winged helix genes, XFD-12/12''/12" (XFLIP), during Xenopus embryogenesis. Paper	laevis	1 image	NF stage 31	chordoneural hinge, tail bud	in situ hybridization
Characterization of a subfamily of related winged helix genes, XFD-12/12''/12" (XFLIP), during Xenopus embryogenesis. Paper	laevis	1 image	NF stage 10	dorsal marginal zone, involuting marginal zone, involuting marginal zone epithelial layer, mesoderm	in situ hybridization
Characterization of a subfamily of related winged helix genes, XFD-12/12''/12" (XFLIP), during Xenopus embryogenesis. Paper	laevis	1 image	NF stage 22	tail bud	in situ hybridization
Characterization of a subfamily of related winged helix genes, XFD-12/12''/12" (XFLIP), during Xenopus embryogenesis. Paper	laevis	1 image	NF stage 11	dorsal involuting marginal zone, dorsal marginal zone, involuting marginal zone epithelial layer, upper blastopore lip	in situ hybridization
Characterization of a subfamily of related winged helix genes, XFD-12/12''/12" (XFLIP), during Xenopus embryogenesis. Paper	laevis	1 image	NF stage 12.5	dorsal marginal zone, involuted dorsal mesoderm, involuting marginal zone epithelial layer	in situ hybridization
A systemic cell cycle block impacts stage-specific histone modification profiles during Xenopus embryogenesis. Paper	laevis	2 images	NF stage 32	brain, cardiac mesoderm, notochord, tail tip	in situ hybridization
Wellcome CRC pcDNAI egg Unigene laevis cDNA library Xenopus IMAGE cDNA Library	laevis		unfertilized egg stage	egg	cDNA Library
Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library Unigene laevis cDNA library	laevis		NF stage 12.5	ectoderm	cDNA Library
Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library Unigene laevis cDNA library	laevis		NF stage 12.5	endomesoderm	cDNA Library

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