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Search Criteria

Gene/Clone	Species	Stage	Anatomy Item	Experimenter
hoxd1	xenopus		mesoderm [+] head mesoderm,presomitic mesoderm,somite,intermediate mesoderm,dermatome,myocoelic slit,paraxial mesoderm,somatic layer of lateral plate mesoderm,splanchnic layer of lateral plate mesoderm,lateral plate mesoderm,myotome,external carotid artery,sclerotome,sclerotomal cartilage,sclerotomal mesenchyme,filter chamber,abdominal myoblast,anterior dorsal lateral plate region,hematopoietic stem cell,mesodermal cell,presumptive paraxial mesoderm,ventral mesoderm,dorsal lateral plate mesoderm,rostral presomitic mesoderm,caudal presomitic mesoderm,migrating macrophage,dorsomedial edge of myotome,ventrolateral edge of myotome,dermomyotome,syndetome,Eberth-Kastschenko layer,M band,abdominal myoblast,anterior dorsal lateral plate region,anterior notochord,anterior palatine artery,anterior ventral blood island,atrial septum,atrioventricular canal,atrioventricular canal endocardium,atrioventricular valve,atrioventricular valve leaflet,axial ossicle,cardiac atrium,cardiac jelly,cardiac myocyte,cardiac progenitor cell,cardiac valve,cardiac ventricle,caudal presomitic mesoderm,cerebral artery,chordoneural hinge,cloaca,cloacal sphincter,cranial skeleton,dermatome,dermomyotome,distal tubule,dorsal fin vasculature,dorsal lateral plate mesoderm,dorsomedial edge of myotome,early distal tubule,early proximal tubule,endocardial cushion,endocardial tube,endocardium,endothelial cell,enteric neuron,epicardial precursor cell,epicardium,external carotid artery,filter chamber,flexural organ,gamete,glomeral nexus,glomerular epithelial cell,glomerular mesangial cell,glomerulus,glomus,hematopoietic stem cell,involuted dorsal mesoderm,involuted ventral mesoderm,late distal tubule,late proximal tubule,left atrium,macrophage,mandibular mesenchyme,mesonephric collecting duct,mesonephric tubule,migrating macrophage,myocardium,myocoelic slit,myofibril,myotome,neurenteric canal,neutrophil,notochordal sheath,ophthalmic artery,outflow tract,pericardial muscle,pericardial roof,pericardium,perichordal tissue,podocyte,postcranial axial skeleton,posterior notochord,posterior palatine artery,posterior ventral blood island,posterior wall of neurenteric canal,prechordal plate,presomitic mesoderm,pronephric duct,pronephric nephron,pronephric nephrostome,pronephric sinus,pronephric tubule,proximal tubule,proximal tubule branch,rectal diverticulum,rib,right atrium,rostral presomitic mesoderm,sarcomere,sclerotomal cartilage,sclerotomal mesenchyme,sclerotome,sinus venosus,skeletal muscle satellite cell,skeletal myocyte,smooth muscle myocyte,somatic layer of lateral plate mesoderm,spiral septum,splanchnic layer of lateral plate mesoderm,stratum compactum,stratum spongiosum,syndetome,thrombocyte,trabecula carnea,transverse process,urostyle,vacuolated notochordal tissue,ventral blood island border,ventral fin vasculature,ventral mesoderm,ventricular outflow tract,ventrolateral edge of myotome,vertebra,vertebral centrum,vertebral column,vertebral element,Mullerian duct,adult thrombocyte,anterior cardinal vein,anterior lymph sac,anterior palatine artery,anterior ventral blood island,aortic arch,arteria iliaca communis,arteria mesenterica posterior,arteria subclavia,arterial endothelium,axial mesoderm,axial skeleton,blood,capillary system of liver,cardiac atrium,cardiac mesoderm,cardinal vein,caudal artery,caudal vein,ceratobranchial I,ceratobranchial II,ceratobranchial III,ceratobranchial IV,cerebral artery,cervical vertebra,chondroblast,chondrocyte,circumblastoporal collar,cloacal sphincter,coeliaco-mesenteric artery,coelomic epithelium,commisura quadratocranialis anterior,cornua trabecula,cranial muscle,cranial muscle primordium,dermatome,dermis,dorsal aorta,dorsal fin vasculature,dorsal lymph space,duct of Cuvier,elastica externa,endocardial tube,endocardium,epicardium,erythroid cell,external carotid artery,external gill,external jugular vein,facies hyoidis of the palatoquadrate,fin vasculature,flexural organ,gastric vein,genital ridge,genital system,gill primordium,glomeral mesenchyme,glomeral nexus,glomus,head mesoderm,head somite 1,head somite 2,head somite 3,head somite 4,heart,heart primordium,hepatic portal vein,hepatic vein,hypaxial muscle,infrarostral,intermediate mesoderm,internal carotid artery,internal jugular vein,interrenal vein,intersomitic artery,intersomitic vein,intersomitic vessel,kidney,larval aorta,lateral plate mesoderm,lateral postcardinal vein,left channel of ventral aorta,left lymph heart,left spleen primordium,lower blastopore lip,lymph vessel,m. cucullaris,m. depressor mandibulae,m. levator scapulae inferior,m. levator scapulae superior,m. petrohyoideus,medial abdominal vein,medial cardinal vein,mesenchymal stem cell,mesonephric duct,mesonephric early distal tubule,mesonephric early proximal tubule,mesonephric late distal tubule,mesonephric late proximal tubule,mesonephric mesenchyme,mesonephric nephron,mesonephric sinus,migrating macrophage,musculoabdominal vein,myeloid cell,myocardium,myotome of head somite 1,myotome of head somite 2,myotome of head somite 3,myotome of head somite 4,myotome of tail somite 14,myotome of tail somite 15,myotome of tail somite 16,myotome of tail somite 17,myotome of tail somite 18,myotome of trunk somite 1,myotome of trunk somite 10,myotome of trunk somite 11,myotome of trunk somite 12,myotome of trunk somite 13,myotome of trunk somite 2,myotome of trunk somite 3,myotome of trunk somite 4,myotome of trunk somite 5,myotome of trunk somite 6,myotome of trunk somite 7,myotome of trunk somite 8,myotome of trunk somite 9,neurenteric canal,notochord,notochordal epithelium,notochordal sheath,occipitovertebral artery,omphalomesenteric vein,oviduct,paired dorsal aorta,palatoquadrati,parachordal,paraxial mesoderm,planum hypobranchiale,planum trabeculare anticum,postcranial axial skeleton,posterior cardinal vein,posterior vena cava,posterior ventral blood island,prechordal plate,presomitic mesoderm,presumptive paraxial mesoderm,primary heart field,processus anterior hyalis,processus articularis palatoquadrati,processus ascendens palatoquadrate,processus lateralis hyalis,processus muscularis palatoquadrati,processus posterior hyalis,processus retroarticularis of Meckel's cartilage,proctodeum,proepicardium,pronephric duct,pronephric kidney,pronephric mesenchyme,pronephric nephrostome,pronephric sinus,pulmonary vein,right channel of ventral aorta,right lymph heart,right spleen primordium,sacral vertebra,sclerotomal cartilage,sclerotomal mesenchyme,sclerotome of head somite 4,sclerotome of tail somite 14,sclerotome of tail somite 15,sclerotome of tail somite 16,sclerotome of tail somite 17,sclerotome of tail somite 18,sclerotome of trunk somite 1,sclerotome of trunk somite 10,sclerotome of trunk somite 11,sclerotome of trunk somite 12,sclerotome of trunk somite 13,sclerotome of trunk somite 2,sclerotome of trunk somite 3,sclerotome of trunk somite 4,sclerotome of trunk somite 5,sclerotome of trunk somite 6,sclerotome of trunk somite 7,sclerotome of trunk somite 8,sclerotome of trunk somite 9,secondary heart field,skeletal muscle,smooth muscle,somatic layer of lateral plate mesoderm,somite,spiral septum,splanchnic layer of lateral plate mesoderm,spleen,subinterstitial vein,subocular cartilage,suprarostral plate,syndetome,tail bud,tail somite 14,tail somite 15,tail somite 16,tail somite 17,tail somite 18,tail vein,tendon,tendon fibroblast,thrombocyte,trabecula carnea,trabecula cranii,trunk somite 1,trunk somite 10,trunk somite 11,trunk somite 12,trunk somite 13,trunk somite 2,trunk somite 3,trunk somite 4,trunk somite 5,trunk somite 6,trunk somite 7,trunk somite 8,trunk somite 9,urostyle,vascular endothelium,venous endothelium,ventral aorta,ventral blood island,ventral blood island border,ventral fin vasculature,vertebral element,vitelline vein

Too many results?Too few results?

Expression summary for hoxd1

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Experiment	Species	Images	Stages	Anatomy	Assay
Strate I et al. (2009) Assay Paper	laevis	2 images	NF stage 12.5	mesoderm	in situ hybridization
Smith TNeu039b14 Assay Smith Lab	tropicalis	1 image	NF stage 35 and 36	early distal tubule, pronephric duct, pronephric nephrostome, pronephric tubule	in situ hybridization
In der Rieden PM et al. (2009) Assay Paper	laevis	1 image	NF stage 11 to NF stage 13	circumblastoporal collar, involuted dorsal mesoderm, mesoderm, paraxial mesoderm	in situ hybridization
Paper	laevis	1 image	NF stage 11.5 to NF stage 29 and 30	circumblastoporal collar, tail bud	in situ hybridization
Paper	laevis	1 image	NF stage 11 to NF stage 12.5	circumblastoporal collar, involuted dorsal mesoderm, lateral plate mesoderm, mesoderm	in situ hybridization
Paper	laevis	1 image	NF stage 10 to NF stage 12	involuted dorsal mesoderm, mesoderm, paraxial mesoderm, presumptive paraxial mesoderm	in situ hybridization
Paper	laevis	1 image	NF stage 11	involuted dorsal mesoderm, mesoderm	in situ hybridization
Interaction between X-Delta-2 and Hox genes regulates segmentation and patterning of the anteroposterior axis. Paper	laevis	1 image	NF stage 10.5 to NF stage 12	circumblastoporal collar, involuted dorsal mesoderm, mesoderm, paraxial mesoderm	in situ hybridization
Regulation of the Xenopus labial homeodomain genes, HoxA1 and HoxD1: activation by retinoids and peptide growth factors. Paper	laevis	1 image	NF stage 16	notochord, prechordal plate	in situ hybridization
Retinoid signalling is required for information transfer from mesoderm to neuroectoderm during gastrulation. Paper	laevis	1 image	NF stage 13	involuted dorsal mesoderm	in situ hybridization
Retinoid signalling is required for information transfer from mesoderm to neuroectoderm during gastrulation. Paper	laevis	1 image	NF stage 11 to NF stage 12.5	axial mesoderm, involuted dorsal mesoderm, involuted ventral mesoderm, presumptive paraxial mesoderm	in situ hybridization
XMeis3 is necessary for mesodermal Hox gene expression and function. Paper	laevis	1 image	NF stage 11 to NF stage 13	intermediate mesoderm, involuted dorsal mesoderm, lateral plate mesoderm, mesoderm, paraxial mesoderm	in situ hybridization
XMeis3 is necessary for mesodermal Hox gene expression and function. Paper	laevis	1 image	NF stage 11	involuted dorsal mesoderm, mesoderm	in situ hybridization
XMeis3 is necessary for mesodermal Hox gene expression and function. Paper	laevis	1 image	NF stage 10.5 to NF stage 12	intermediate mesoderm, mesoderm	in situ hybridization
XMeis3 is necessary for mesodermal Hox gene expression and function. Paper	laevis	1 image	NF stage 11	intermediate mesoderm	in situ hybridization
Janssens S et al. (2010) Assay Paper	laevis	1 image	NF stage 17	paraxial mesoderm	in situ hybridization
Wacker SA et al. (2004) Assay Paper	laevis	2 images	NF stage 12 to NF stage 26	circumblastoporal collar, mesoderm, presomitic mesoderm	in situ hybridization
Hox collinearity - a new perspective. Paper	laevis	1 image	NF stage 12 to NF stage 12.5	circumblastoporal collar, mesoderm	in situ hybridization
Interaction between X-Delta-2 and Hox genes regulates segmentation and patterning of the anteroposterior axis. Paper	laevis	1 image	NF stage 11.5	involuted dorsal mesoderm, mesoderm	in situ hybridization
Interaction between X-Delta-2 and Hox genes regulates segmentation and patterning of the anteroposterior axis. Paper	laevis	1 image	NF stage 11	involuted dorsal mesoderm, mesoderm	in situ hybridization
The initiation of Hox gene expression in Xenopus laevis is controlled by Brachyury and BMP-4. Paper	laevis	1 image	NF stage 11	involuted dorsal mesoderm, mesoderm	in situ hybridization
The initiation of Hox gene expression in Xenopus laevis is controlled by Brachyury and BMP-4. Paper	laevis	1 image	NF stage 11	involuted dorsal mesoderm, mesoderm	in situ hybridization
The initiation of Hox gene expression in Xenopus laevis is controlled by Brachyury and BMP-4. Paper	laevis	1 image	NF stage 10.5	involuted dorsal mesoderm, mesoderm	in situ hybridization
The initiation of Hox gene expression in Xenopus laevis is controlled by Brachyury and BMP-4. Paper	laevis	1 image	NF stage 11	involuted dorsal mesoderm, mesoderm	in situ hybridization
Wacker SA et al. (2004) Assay Paper	laevis	4 images	NF stage 10.5 to NF stage 11	involuted dorsal mesoderm, involuted ventral mesoderm, mesoderm	in situ hybridization
Chen JA et al. (2005) Assay Paper	tropicalis	1 image	NF stage 20 to NF stage 28	lateral plate mesoderm, mesoderm	in situ hybridization
Time space translation: a hox mechanism for vertebrate a-p patterning. Paper	laevis	1 image	NF stage 10.5 to NF stage 12.5	circumblastoporal collar	in situ hybridization
Gawantka V et al. (1998) Assay Paper	laevis	1 image	NF stage 29 and 30	tail bud	in situ hybridization
Collinear Hox-Hox interactions are involved in patterning the vertebrate anteroposterior (A-P) axis. Paper	laevis	1 image	NF stage 12	circumblastoporal collar	in situ hybridization

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