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Search Criteria

Gene/Clone	Species	Stage	Anatomy Item	Experimenter
shh	xenopus		brain [+] forebrain,telencephalon,diencephalon,midbrain,hindbrain,midbrain-hindbrain boundary,hypophysis,ventricular zone,pineal gland,optic stalk,cerebellum,fourth ventricle,medulla oblongata,optic tectum,hypothalamus,optic chiasm,suprachiasmatic nucleus,rhombomere,optic tract,rhombic lip,metencephalic artery,metencephalic vein,mesencephalic artery,mesencephalic vein,olfactory bulb,infundibulum,ventral tegmentum,dorsal tegmentum,anterior hypothalamus,posterior hypothalamus,lateral ganglionic eminence,subpallium,medial ganglionic eminence,midbrain tegmentum,eminentia thalami,pallium,pretectum,prethalamus,zona limitans intrathalamica,thalamus,oculomotor motornucleus,dorsal thalamus,trochlear motornucleus,anterior tectum,posterior tectum,accessory olfactory bulb,amygdala,anterior amygdala,anterior commissure,anterior entopeduncular nucleus,anterior thalamic nucleus,anterodorsal tegmental nucleus,anteroventral tegmental nucleus,basal forebrain,basal ganglion,bed nucleus of the stria terminalis,central amygdala,central nucleus of the thalamus,dorsal column nucleus,dorsal habenular nucleus,dorsal pallidum,dorsal pallium,dorsal septum,external plexiform layer of the olfactory bulb,glomerular layer of the olfactory bulb,granule cell,granule cell layer of the cerebellum,granule cell layer of the olfactory bulb,habenula,isthmic nucleus,lateral amygdala,lateral forebrain bundle,lateral hypothalamic nucleus,lateral pallium,lateral septum,laterodorsal tegmental nucleus,locus coeruleus,magnocellular preoptic nucleus,medial amygdala,medial pallium,medial septum,mitral cell,mitral cell layer of the olfactory bulb,nucleus accumbens,nucleus of the diagonal band,pallidum,posterior commissure,posterodorsal tegmental nucleus,posteroventral tegmental nucleus,preoptic area,raphe nucleus,telencephalon septum,solitary tract,striatum,subcommissural organ,subthalamic nucleus,torus semicircularis,ventral habenular nucleus,ventral hypothalamic nucleus,ventral pallidum,ventral pallium,ventrolateral thalamic nucleus,ventromedial thalamic nucleus,prosomere,prosomere 4,prosomere 5,prosomere 6,brain ventricle,mammilary region,tuberal region,third ventricle,forebrain-midbrain boundary,ventricular layer of the optic tectum,neuropil of the optic tectum,cell body layer of the optic tectum,radial glial cell,neural stem cell,Mauthner cell,caudal tuberal region,rostral tuberal region,nucleus of the solitary tract,prethalamus basal plate,retromammillary area,nucleus reticularis medialis,nucleus reticularis superior,nucleus reticularis inferior,ventral septum,supraoptoparaventricular region,stria terminalis,anterior entopeduncular region,astrocyte,oligodendrocyte,astrocyte end-foot,melanotrope,adenohypophysis,neurohypophysis,pars distalis,pars nervosa,pars intermedia,dorsal telencephalon,pial cell,pia mater,amygdala,anterior amygdala,anterior entopeduncular nucleus,anterior tectum,astrocyte end-foot,basal ganglion,bed nucleus of the stria terminalis,cell body layer of the optic tectum,central amygdala,dorsal pallidum,dorsal septum,lateral amygdala,lateral septum,medial amygdala,medial septum,neuropil of the optic tectum,nucleus accumbens,nucleus of the diagonal band,pallidum,pars nervosa,posterior tectum,radial glial cell,striatum,subthalamic nucleus,telencephalon septum,ventral pallidum,ventral septum,ventricular layer of the optic tectum,Stirnorgan,amygdala,astrocyte,astrocyte end-foot,basal forebrain,basal ganglion,neurohypophysis,nucleus of the diagonal band,oligodendrocyte,optic nerve,optic tectum,pallidum,radial glial cell,striatum,telencephalon septum

Too many results?Too few results?

Expression summary for shh

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Experiment	Species	Images	Stages	Anatomy	Assay
Howell M et al. (2002) Assay Paper	xenopus	1 image	NF stage 35 and 36	brain	in situ hybridization
Negative regulation of Hedgehog signaling by the cholesterogenic enzyme 7-dehydrocholesterol reductase. Paper	xenopus	1 image	NF stage 29 and 30 to NF stage 35 and 36	brain	in situ hybridization
Olfactory and lens placode formation is controlled by the hedgehog-interacting protein (Xhip) in Xenopus. Paper	laevis	1 image	NF stage 32	brain, diencephalon, ventricular zone	in situ hybridization
R-Spondin2 is a secreted activator of Wnt/beta-catenin signaling and is required for Xenopus myogenesis. Paper	laevis	1 image	NF stage 50	brain, thalamus, zona limitans intrathalamica	in situ hybridization
Xenbase User Curated Experiment European Xenopus Resource Centre (EXRC)	tropicalis	1 image	NF stage 32	brain	in situ hybridization
Xenopus sonic hedgehog guides retinal axons along the optic tract. Paper	laevis	1 image	NF stage 32 to NF stage 37 and 38	brain, optic stalk	in situ hybridization
A novel function for Hedgehog signalling in retinal pigment epithelium differentiation. Paper	laevis	1 image	NF stage 41	brain, forebrain, hindbrain, midbrain, pineal gland	in situ hybridization
The role of Xenopus dickkopf1 in prechordal plate specification and neural patterning. Paper	xenopus	1 image	NF stage 44	midbrain, telencephalon	in situ hybridization
Takabatake T et al. (2000) Assay Paper	laevis	2 images	NF stage 27 to NF stage 35 and 36	brain, forebrain	in situ hybridization
Transmembrane voltage potential controls embryonic eye patterning in Xenopus laevis. Paper	laevis	1 image	NF stage 29 and 30	forebrain, hindbrain, midbrain	in situ hybridization
Essential role of CREB family proteins during Xenopus embryogenesis. Paper	laevis	1 image	NF stage 28	brain	in situ hybridization
Rankin SA et al. (2012) Assay Paper	laevis	1 image	NF stage 33 and 34 to NF stage 35 and 36	brain, diencephalon, forebrain, hindbrain	in situ hybridization
Distinct expression and shared activities of members of the hedgehog gene family of Xenopus laevis. Paper	laevis	1 image	NF stage 29 and 30	brain, forebrain, hindbrain, midbrain	in situ hybridization
Multiple stage-dependent roles for histone deacetylases during amphibian embryogenesis: implications for the involvement of ... Paper	laevis	1 image	NF stage 33 and 34 to NF stage 41	brain, forebrain	in situ hybridization
Sulf1 influences the Shh morphogen gradient during the dorsal ventral patterning of the neural tube in Xenopus tropicalis. Paper	tropicalis	1 image	NF stage 35 and 36	hindbrain, midbrain, pretectum	in situ hybridization
Rankin SA et al. (2014) Assay Paper	laevis	1 image	NF stage 32	brain	in situ hybridization
Early development of the neural plate: New roles for apoptosis and for one of its main effectors caspase-3. Paper	laevis	1 image	NF stage 27	brain, subpallium, zona limitans intrathalamica	in situ hybridization
Juraver-Geslin HA et al. (2014) Assay Paper	laevis	5 images	NF stage 29 and 30 to NF stage 37 and 38	basal forebrain, forebrain, zona limitans intrathalamica	in situ hybridization
Patterns of hypothalamic regionalization in amphibians and reptiles: common traits revealed by a genoarchitectonic approach.	laevis	1 image	NF stage 46	preoptic area	immunohistochemistry
Patient Lab	laevis	6 images	NF stage 10.5 to NF stage 40	brain, forebrain	in situ hybridization
Koide T et al. (2006) Assay Paper	laevis	1 image	NF stage 22 to NF stage 44	brain	in situ hybridization
Prepatterning and patterning of the thalamus along embryonic development of Xenopus laevis. Paper	laevis	1 image	NF stage 33 and 34 to NF stage 37 and 38	brain, diencephalon, forebrain, zona limitans intrathalamica	immunohistochemistry
Prepatterning and patterning of the thalamus along embryonic development of Xenopus laevis. Paper	laevis	1 image	NF stage 33 and 34 to NF stage 37 and 38	diencephalon, forebrain, prethalamus, telencephalon, thalamus, [+] zona limitans intrathalamica	in situ hybridization
Juraver-Geslin HA et al. (2011) Assay Paper	laevis	1 image	NF stage 32	zona limitans intrathalamica	in situ hybridization
A Retinoic Acid-Hedgehog Cascade Coordinates Mesoderm-Inducing Signals and Endoderm Competence during Lung Specification. Paper	laevis	1 image	NF stage 29 and 30 to NF stage 32	brain	in situ hybridization

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