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Gene/Clone	Species	Stage	Anatomy Item	Experimenter
lhx1	xenopus		embryo [+] pronephric nephrostome,pronephric duct,animal blastomere,animal hemisphere,germ plasm,vegetal blastomere,vegetal hemisphere,pronephric nephron,late proximal tubule,early distal tubule,early proximal tubule,late distal tubule,glomus,pronephric sinus,pronephric kidney,primary germ layer,blastomere,embryonic structure,podocyte,early embryonic cell,animal pole,pronephric tubule,vegetal pole,glomeral nexus,proximal tubule,distal tubule,proximal tubule branch,coelom,glomerular mesangial cell,glomerular epithelial cell,germinal granule,prime meridian,Roux spot,fasciculated network of fibrils,germinal vesicle,mitochondrial cloud,oocyte cortex,ooplasm,ring structure,subcortical cytoplasm,vegetal cortex,wedge region,yolk platelet,anatomical group,anatomical region,anatomical space,animal blastomere,blastomere D1,blastomere D1.1,blastomere D1.1.1,blastomere D1.1.2,blastomere D1.2,blastomere D1.2.1,blastomere D1.2.2,blastomere D2,blastomere D2.1,blastomere D2.1.1,blastomere D2.1.2,blastomere D2.2,blastomere D2.2.1,blastomere D2.2.2,blastomere V1,blastomere V1.1,blastomere V1.1.1,blastomere V1.1.2,blastomere V1.2,blastomere V1.2.1,blastomere V1.2.2,blastomere V2,blastomere V2.1,blastomere V2.1.1,blastomere V2.1.2,blastomere V2.2,blastomere V2.2.1,blastomere V2.2.2,egg,embryonic structure,glomeral nexus,mesonephric duct,multicellular anatomical structure,oocyte,polar body,primary oogonium,primary spermatogonium,primordial germ cell,process,secondary oogonium,secondary spermatogonium,spermatid,spermatocyte,spermatozoon,vegetal blastomere

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Expression summary for lhx1

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Experiment	Species	Images	Stages	Anatomy	Assay
Li L et al. (2012) Assay Paper	laevis	2 images	NF stage 35 and 36 to NF stage 37 and 38	brain, hindbrain, pronephric duct, pronephric nephrostome, spinal cord	in situ hybridization
Xenopus brain factor-2 controls mesoderm, forebrain and neural crest development. Paper	laevis	1 image	NF stage 10.5 to NF stage 11.5	dorsal marginal zone, involuting marginal zone, upper blastopore lip	in situ hybridization
Hooker L et al. (2012) Assay Paper	laevis	1 image	NF stage 19 to NF stage 27	ectoderm, head, lateral plate mesoderm, mesoderm, paraxial mesoderm, [+] presomitic mesoderm, pronephric duct, pronephric kidney, pronephric tubule, somite	in situ hybridization
Comparative Functional Analysis of ZFP36 Genes during Xenopus Development. Paper	laevis	2 images	NF stage 26 to NF stage 29 and 30	intermediate mesoderm, neural tube, otic region, pronephric duct, pronephric kidney	in situ hybridization
Tran U et al. (2007) Assay Paper	laevis	1 image	NF stage 35 and 36	late distal tubule, pronephric duct, pronephric kidney, pronephric nephrostome	in situ hybridization
Analysis of the developing Xenopus tail bud reveals separate phases of gene expression during determination and outgrowth. Paper	laevis	1 image	NF stage 14 to NF stage 29 and 30	axial mesoderm, brain, chordoneural hinge, hindbrain, intermediate mesoderm, [+] midbrain, neural plate, notochord, pronephric duct, pronephric kidney, spinal cord, tail tip, upper blastopore lip	in situ hybridization
Beck CW and Slack JM (1998) Assay Paper	laevis	4 images	NF stage 14 to NF stage 32	axial mesoderm, brain, chordoneural hinge, forebrain, hindbrain, [+] intermediate mesoderm, midbrain, neural groove, notochord, pronephric duct, pronephric kidney, spinal cord, tail bud, tail tip, upper blastopore lip	in situ hybridization
Lhx1 is required for specification of the renal progenitor cell field. Paper	laevis	1 image	NF stage 12.5 to NF stage 32	intermediate mesoderm, pronephric duct, spinal cord, tail tip	in situ hybridization
Li DH et al. (2005) Assay Paper	laevis	1 image	NF stage 29 and 30	anterior dorsal lateral plate region, brain, hindbrain, midbrain, pronephric mesenchyme	in situ hybridization
Kam RK et al. (2013) Assay Paper	laevis	2 images	NF stage 10.25 to NF stage 35 and 36	brain, hindbrain, involuting marginal zone, midbrain, pronephric duct, [+] pronephric kidney, pronephric sinus, spinal cord, upper blastopore lip	in situ hybridization
LIM-homeodomain genes as developmental and adult genetic markers of Xenopus forebrain functional subdivisions. Paper	laevis	1 image	adult frog stage	bed nucleus of the stria terminalis, brain, forebrain, mammilary region, medial septum, [+] pretectum, telencephalon septum, thalamus, ventral septum, ventrolateral thalamic nucleus, ventromedial thalamic nucleus	in situ hybridization
LIM-homeodomain genes as developmental and adult genetic markers of Xenopus forebrain functional subdivisions. Paper	laevis	1 image	NF stage 42 to NF stage 46	amygdala, brain, diencephalon, medial amygdala, optic tectum, [+] prosomere, prosomere 4, zona limitans intrathalamica	in situ hybridization
LIM-homeodomain genes as developmental and adult genetic markers of Xenopus forebrain functional subdivisions. Paper	laevis	1 image	NF stage 66	optic tectum, thalamus	in situ hybridization
Expression of the LIM class homeobox gene Xlim-1 in pronephros and CNS cell lineages of Xenopus embryos is affected by retin... Paper	laevis	1 image	NF stage 12 to NF stage 31	brain, chordoneural hinge, hindbrain, intermediate mesoderm, lateral plate mesoderm, [+] mesoderm, midbrain, neural plate, neural tube, neuroectoderm, notochord, pronephric duct, pronephric kidney, pronephric mesenchyme, spinal cord, tail bud	in situ hybridization
Taira M et al. (1994) Assay Paper	laevis	1 image	NF stage 10.25 to NF stage 33 and 34	brain, central nervous system, dorsal marginal zone, forebrain, hindbrain, [+] intermediate mesoderm, lateral plate mesoderm, mesoderm, midbrain, neural plate, neuroectoderm, pronephric mesenchyme, spinal cord	in situ hybridization
Hex acts with beta-catenin to regulate anteroposterior patterning via a Groucho-related co-repressor and Nodal. Paper	laevis	1 image	NF stage 10.5	dorsal marginal zone	in situ hybridization
Buisson I et al. (2014) Assay Paper	laevis	6 images	NF stage 18 to NF stage 25	axial mesoderm, dorsal lateral plate mesoderm, hindbrain, lateral plate mesoderm, mesoderm, [+] neural tube, pronephric mesenchyme, spinal cord	in situ hybridization
Urban AE et al. (2006) Assay Paper	laevis	1 image	NF stage 15 to NF stage 22	pronephric mesenchyme	in situ hybridization
Wallingford JB et al. (1998) Assay Paper	laevis	1 image	NF stage 20	intermediate mesoderm, pronephric mesenchyme	in situ hybridization
The LIM domain-containing homeo box gene Xlim-1 is expressed specifically in the organizer region of Xenopus gastrula embryos. Paper	laevis	1 image	NF stage 11	mesoderm	in situ hybridization
ADMP2 is essential for primitive blood and heart development in Xenopus. Paper	laevis	1 image	NF stage 24	intermediate mesoderm, pronephric mesenchyme	in situ hybridization
Shi W et al. (2015) Assay Paper	laevis	3 images	NF stage 15 to NF stage 32	pronephric kidney, pronephric mesenchyme	in situ hybridization
Shibata T et al. (2008) Assay Paper	laevis	1 image	NF stage 32	brain, hindbrain, pronephric duct, pronephric kidney, spinal cord	in situ hybridization
Carroll TJ and Vize PD (1999) Assay Paper	laevis	1 image	NF stage 35 and 36	hindbrain, pronephric duct, pronephric kidney, pronephric tubule, spinal cord	in situ hybridization
Hspa9 is required for pronephros specification and formation in Xenopus laevis. Paper	laevis	1 image	NF stage 19	lateral plate mesoderm	in situ hybridization
Soeren S Lienkamp	laevis	4 images	NF stage 22 to NF stage 37 and 38	brain, early distal tubule, eye, intermediate mesoderm, late distal tubule, [+] pronephric duct, pronephric kidney, proximal tubule branch, tail tip	in situ hybridization
The mutated human gene encoding hepatocyte nuclear factor 1beta inhibits kidney formation in developing Xenopus embryos. Paper	laevis	1 image	NF stage 24	pronephric mesenchyme	in situ hybridization
Xenopus pitx3 target genes lhx1 and xnr5 are identified using a novel three-fluor flow cytometry-based analysis of promoter ... Paper	laevis	1 image	NF stage 10.5	dorso-lateral marginal zone	in situ hybridization
Espiritu EB et al. (2018) Assay Paper	laevis	1 image	NF stage 10 to NF stage 18	intermediate mesoderm, involuting marginal zone, lateral plate mesoderm, notochord	in situ hybridization
EphA7 regulates claudin6 and pronephros development in Xenopus. Paper	laevis	1 image	NF stage 35 and 36	pronephric duct, pronephric kidney, pronephric nephrostome	in situ hybridization
LIM-homeodomain genes as developmental and adult genetic markers of Xenopus forebrain functional subdivisions. Paper	laevis	1 image	adult frog stage	anterior commissure, bed nucleus of the stria terminalis, brain, central nucleus of the thalamus, forebrain, [+] lateral hypothalamic nucleus, lateral septum, mammilary region, medial septum, preoptic area, pretectum, suprachiasmatic nucleus, telencephalon septum, ventral septum, ventrolateral thalamic nucleus, ventromedial thalamic nucleus	in situ hybridization
LIM-homeodomain genes as developmental and adult genetic markers of Xenopus forebrain functional subdivisions. Paper	laevis	1 image	adult frog stage	amygdala, anterior thalamic nucleus, bed nucleus of the stria terminalis, brain, central nucleus of the thalamus, [+] diencephalon, forebrain, lateral septum, mammilary region, medial amygdala, medial septum, preoptic area, pretectum, retromammillary area, suprachiasmatic nucleus, telencephalon septum, thalamus, ventral septum, ventrolateral thalamic nucleus, ventromedial thalamic nucleus	in situ hybridization
Suzuki N et al. (2019) Assay Paper	laevis	1 image	NF stage 41 to NF stage 46	pronephric duct, pronephric kidney	in situ hybridization
Chae S et al. (2017) Assay Paper	laevis	1 image	NF stage 12.5	mesoderm	in situ hybridization
DeLay BD et al. (2019) Assay Paper	laevis	2 images	NF stage 26 to NF stage 28	pronephric mesenchyme	in situ hybridization
Yasuoka Y et al. (2014) Assay Paper	laevis	1 image	NF stage 10.5	dorsal involuting marginal zone, dorsal marginal zone, upper blastopore lip	in situ hybridization
Lienkamp S et al. (2010) Assay Paper	laevis	1 image	NF stage 25	pronephric mesenchyme	in situ hybridization
Xenopus tropicalis xtbs plasmid library Unigene tropicalis cDNA library	tropicalis		NF stage 58 to NF stage 64	central nervous system	cDNA Library
NIH_XGC_tropTe5 Unigene tropicalis cDNA library Xenopus IMAGE cDNA Library	tropicalis		unspecified stage	testis	cDNA Library
Blumberg_Cho dorsal blastopore lip Unigene laevis cDNA library Xenopus IMAGE cDNA Library	laevis		NF stage 7 to NF stage 9	upper blastopore lip	cDNA Library
Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library Unigene laevis cDNA library	laevis		NF stage 12.5	endomesoderm	cDNA Library

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