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GEO Series: GSE53652

Title: Genome-wide view of TGFb/Foxh1 regulation of the early mesendoderm program [ChIP-seq]

Summary

We defined the genome-wide binding regions of Smad2/3 and Foxh1 at mid-gastrula stage Xenopus tropicalis embryos, at which Nodal signaling and Foxh1 are critical in mesendoderm specification program.


Contributors: William Chiu, William Chiu, Ken Cho

Experiment Type: Binding profile of the TFs Smad2/3 and Foxh1 in gastrula stage (st10.5) Xenopus tropicalis embryos using ChIP-seq approach.

Article: Xenbase, PubMed

Source: NCBI GEO, Xenbase FTP

Samples: (DEG = Differentially Expressed Genes; GSM = GEO Sample Number)
Sample View GSMs Assay Type
input WE - NF10.5 GSM1298094  ChIP-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 10.5  
   Foxh1 WE - NF10.5 GSM1298090  GSM1298091  ChIP-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 10.5 Foxh1 Ab2
   Smad2/3 WE - NF10.5 GSM1298092  GSM1298093  ChIP-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 10.5 Smad2 Ab8
Select All DEG      Select All 
Xtr   
Xla 

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