GEO Series: GSE56169
We characterized the binding of Smad2/3 using ChIP-SEQ in both control gastrula-stage X. tropicalis embryos and embryos depleted of the transcription factor E2a (E2a-MO). We also characterized gene expression in control and E2a-depleted embryos by RNA-Seq. For ChIP-Seq, three biological replicates of E2a-MO were performed, and two biological replicates of Control embryos were performed. For RNA-Seq, two biological replicates of E2a-MO were performed, and two biological replicates of Control embryos were performed, and the mean expression levels of each gene were compared.
Contributors: Andrea Wills, Andrea Wills, Julie Baker
Experiment Type: For ChIP-Seq, three biological replicates were performed for E2a-depleted X. tropicalis embryos, and two biological replicates were performed for control gastrula-stage embryos. For RNA-Seq, two biological replicates were performed for both E2a-depleted embryos and control embryos, and the mean expression levels were compared for each gene.
Experiment Reagents: tcf3 MO1.
Article: Xenbase, PubMed
Source: NCBI GEO, Xenbase FTP
Samples: (DEG = Differentially Expressed Genes; GSM = GEO Sample Number)
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