Click here to close Hello! We notice that you are using Internet Explorer, which is not supported by Xenbase and may cause the site to display incorrectly. We suggest using a current version of Chrome, FireFox, or Safari.
Return to search results

GEO Series: GSE58420

Title: Next generation sequencing identifies differentially localized transcripts in Xenopus laevis and Xenopus tropicalis oocytes

Summary

RNA-seq technology was used to identify differentially localized transcripts from Xenopus laevis and Xenopus tropicalis stage VI oocytes. Besides the discovery of a group of novel animally enriched RNAs, this study revealed a surprisingly low conservation of vegetal RNA localization between the two frog species.


Contributors: Gabriela Salinas-Riester, Maike Claußen, Tomas Pieler

Experiment Type: mRNA profiles of Xenopus laevis and Xenopus tropicalis animal and vegetal oocyte halves were generated by RNA-seq technology. For Xenopus laevis, animal and vegetal oocyte RNA preparations from two different females were generated in duplicates. For Xenopus tropicalis, animal and vegetal oocyte RNA preparations from two different females were analyzed.

Article: XB-ART-51224, PubMed

Source: NCBI GEO, Xenbase FTP

Samples: (DEG = Differentially Expressed Genes; GSM = GEO Sample Number)
Sample View GSMs Assay Type
animal oocyte - oocyte VI GSM1410605  GSM1410606  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
animal oocyte stage VI  
oocyte oocyte stage VI  
vegetal oocyte - oocyte VI GSM1410607  GSM1410608  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
oocyte oocyte stage VI  
vegetal oocyte stage VI  
animal oocyte - oocyte VI GSM1410597  GSM1410598  GSM1410599  GSM1410600  RNA-Seq
Background: Xla.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
animal oocyte stage VI  
oocyte oocyte stage VI  
vegetal oocyte - oocyte VI GSM1410601  GSM1410602  GSM1410603  GSM1410604  RNA-Seq
Background: Xla.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
oocyte oocyte stage VI  
vegetal oocyte stage VI  
Select All 
Xtr   
Xla 

Return to search results