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GEO Series: GSE65785

Title: Measuring Absolute RNA Copy Numbers at High Temporal Resolution Reveals Transcriptome Kinetics in Development

Summary

Transcript regulation is essential for cell function, and misregulation can lead to disease. Despite technologies to survey the transcriptome, we lack a comprehensive understanding of transcript kinetics, which limits quantitative biology. This is an acute challenge in embryonic development where rapid changes in gene expression dictate cell fate decisions. By ultra-high frequency sampling of Xenopus embryos and absolute normalization of sequence reads, we present smooth gene expression trajectories in absolute transcript numbers. During a developmental period approximating the first 8 weeks of human gestation, transcript kinetics vary by 8 orders of magnitude. Ordering genes by expression dynamics, we find temporal synexpression predicts common gene function. Remarkably, a single parameter, the characteristic timescale, can classify transcript kinetics globally and distinguish genes regulating development from those involved in cellular metabolism. Overall, our analysis provides unprecedented insight into the reorganization of maternal and embryonic transcripts and redefines our ability to perform quantitative biology. Gene expression profiles may be visualized at http://genomics.crick.ac.uk/apps/profiles/


Contributors: Mike Gilchrist, Nick Owens, Ira Blitz, Maura Lane, Ilya Patrushev, John Overton, Michael Gilchrist, Ken Cho, Mustafa Khokha

Experiment Type: High Resolution Time series covering the first 66 hours of development of Xenopus tropicalis with PolyA+ and ribosomal depletion sequencing.

Article: Xenbase, PubMed

Source: NCBI GEO, Xenbase FTP

Samples: (DEG = Differentially Expressed Genes; GSM = GEO Sample Number)
Sample View GSMs Assay Type
WE - NF1 (0.5hpf) - ClutchA GSM1606176  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 1  
WE - NF1 (0.5hpf) - ClutchA rd GSM1606273  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 1  
WE - NF1 (0.5hpf) - ClutchB GSM1606320  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 1  
WE - NF1 (0hpf) - ClutchA GSM1606175  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 1  
WE - NF1 (0hpf) - ClutchA rd GSM1606271  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 1  
WE - NF1 (0hpf) - ClutchB GSM1606319  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 1  
WE - NF10 (6.5hpf) - ClutchA GSM1606188  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 10  
WE - NF10 (6.5hpf) - ClutchA rd GSM1606276  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 10  
WE - NF10 (6.5hpf) - ClutchB GSM1606332  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 10  
WE - NF10 (7.5hpf) - ClutchA GSM1606190  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 10  
WE - NF10 (7.5hpf) - ClutchA rd GSM1606278  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 10  
WE - NF10 (7.5hpf) - ClutchB GSM1606334  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 10  
WE - NF10 (7hpf) - ClutchA GSM1606189  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 10  
WE - NF10 (7hpf) - ClutchA rd GSM1606277  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 10  
WE - NF10 (7hpf) - ClutchB GSM1606333  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 10  
WE - NF11 (8hpf) - ClutchA GSM1606191  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 11  
WE - NF11 (8hpf) - ClutchA rd GSM1606279  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 11  
WE - NF11 (8hpf) - ClutchB GSM1606335  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 11  
WE - NF12 (10hpf) - ClutchA GSM1606195  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 12  
WE - NF12 (10hpf) - ClutchA rd GSM1606283  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 12  
WE - NF12 (10hpf) - ClutchB GSM1606339  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 12  
WE - NF12 (8.5hpf) - ClutchA GSM1606192  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 12  
WE - NF12 (8.5hpf) - ClutchA rd GSM1606280  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 12  
WE - NF12 (8.5hpf) - ClutchB GSM1606336  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 12  
WE - NF12 (9.5hpf) - ClutchA GSM1606194  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 12  
WE - NF12 (9.5hpf) - ClutchA rd GSM1606282  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 12  
WE - NF12 (9.5hpf) - ClutchB GSM1606338  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 12  
WE - NF12 (9hpf) - ClutchA GSM1606193  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 12  
WE - NF12 (9hpf) - ClutchA rd GSM1606281  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 12  
WE - NF12 (9hpf) - ClutchB GSM1606337  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 12  
WE - NF12.5 (10.5hpf) - ClutchA GSM1606196  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 12.5  
WE - NF12.5 (10.5hpf) - ClutchA rd GSM1606285  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 12.5  
WE - NF12.5 (10.5hpf) - ClutchB GSM1606340  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 12.5  
WE - NF12.5 (11.5hpf) - ClutchA GSM1606198  GSM1606265  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 12.5  
WE - NF12.5 (11.5hpf) - ClutchA rd GSM1606287  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 12.5  
WE - NF12.5 (11.5hpf) - ClutchB GSM1606342  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 12.5  
WE - NF12.5 (11hpf) - ClutchA GSM1606197  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 12.5  
WE - NF12.5 (11hpf) - ClutchA rd GSM1606286  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 12.5  
WE - NF12.5 (11hpf) - ClutchB GSM1606341  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 12.5  
WE - NF13 (12.5hpf) - ClutchA GSM1606200  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 13  
WE - NF13 (12.5hpf) - ClutchA rd GSM1606289  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 13  
WE - NF13 (12.5hpf) - ClutchB GSM1606344  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 13  
WE - NF13 (12hpf) - ClutchA GSM1606199  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 13  
WE - NF13 (12hpf) - ClutchA rd GSM1606288  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 13  
WE - NF13 (12hpf) - ClutchB GSM1606343  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 13  
WE - NF13 (13hpf) - ClutchA GSM1606201  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 13  
WE - NF13 (13hpf) - ClutchA rd GSM1606290  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 13  
WE - NF13 (13hpf) - ClutchB GSM1606345  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 13  
WE - NF14 (13.5hpf) - ClutchA GSM1606202  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 14  
WE - NF14 (13.5hpf) - ClutchA rd GSM1606291  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 14  
WE - NF14 (13.5hpf) - ClutchB GSM1606346  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 14  
WE - NF14 (14hpf) - ClutchA GSM1606203  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 14  
WE - NF14 (14hpf) - ClutchA rd GSM1606292  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 14  
WE - NF14 (14hpf) - ClutchB GSM1606347  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 14  
WE - NF15 (14.5hpf) - ClutchA GSM1606204  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 15  
WE - NF15 (14.5hpf) - ClutchA rd GSM1606293  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 15  
WE - NF15 (14.5hpf) - ClutchB GSM1606348  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 15  
WE - NF16-17 (15hpf) - ClutchA GSM1606205  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 16 to NF stage 17  
WE - NF16-17 (15hpf) - ClutchA rd GSM1606294  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 16 to NF stage 17  
WE - NF16-17 (15hpf) - ClutchB GSM1606349  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 16 to NF stage 17  
WE - NF18-19 (15.5hpf) - ClutchA GSM1606206  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 18 to NF stage 19  
WE - NF18-19 (15.5hpf) - ClutchA rd GSM1606296  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 18 to NF stage 19  
WE - NF18-19 (15.5hpf) - ClutchB GSM1606350  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 18 to NF stage 19  
WE - NF2- (1hpf) - ClutchA GSM1606177  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 2-  
WE - NF2- (1hpf) - ClutchA rd GSM1606284  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 2-  
WE - NF2- (1hpf) - ClutchB GSM1606321  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 2-  
WE - NF20 (16hpf) - ClutchA GSM1606207  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 20  
WE - NF20 (16hpf) - ClutchA rd GSM1606297  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 20  
WE - NF20 (16hpf) - ClutchB GSM1606351  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 20  
WE - NF21 (16.5hpf) - ClutchA GSM1606208  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 21  
WE - NF21 (16.5hpf) - ClutchA rd GSM1606298  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 21  
WE - NF21 (16.5hpf) - ClutchB GSM1606352  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 21  
WE - NF21 (17hpf) - ClutchA GSM1606209  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 21  
WE - NF21 (17hpf) - ClutchA rd GSM1606299  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 21  
WE - NF21 (17hpf) - ClutchB GSM1606353  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 21  
WE - NF22 (17.5hpf) - ClutchA GSM1606210  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 22  
WE - NF22 (17.5hpf) - ClutchA rd GSM1606300  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 22  
WE - NF22 (17.5hpf) - ClutchB GSM1606354  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 22  
WE - NF22 (18hpf) - ClutchA GSM1606211  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 22  
WE - NF22 (18hpf) - ClutchA rd GSM1606301  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 22  
WE - NF22 (18hpf) - ClutchB GSM1606355  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 22  
WE - NF23 (18.5hpf) - ClutchA GSM1606212  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 23  
WE - NF23 (18.5hpf) - ClutchA rd GSM1606302  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 23  
WE - NF23 (18.5hpf) - ClutchB GSM1606356  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 23  
WE - NF24 (19.5hpf) - ClutchA GSM1606214  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 24  
WE - NF24 (19.5hpf) - ClutchA rd GSM1606304  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 24  
WE - NF24 (19.5hpf) - ClutchB GSM1606358  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 24  
WE - NF24 (19hpf) - ClutchA GSM1606213  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 24  
WE - NF24 (19hpf) - ClutchA rd GSM1606303  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 24  
WE - NF24 (19hpf) - ClutchB GSM1606357  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 24  
WE - NF24 (20.5hpf) - ClutchA GSM1606216  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 24  
WE - NF24 (20.5hpf) - ClutchA rd GSM1606307  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 24  
WE - NF24 (20.5hpf) - ClutchB GSM1606360  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 24  
WE - NF24 (20hpf) - ClutchA GSM1606215  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 24  
WE - NF24 (20hpf) - ClutchA rd GSM1606305  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 24  
WE - NF24 (20hpf) - ClutchB GSM1606359  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 24  
WE - NF25 (21.5hpf) - ClutchA GSM1606218  GSM1606266  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 25  
WE - NF25 (21.5hpf) - ClutchA rd GSM1606309  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 25  
WE - NF25 (21.5hpf) - ClutchB GSM1606362  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 25  
WE - NF25 (21hpf) - ClutchA GSM1606217  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 25  
WE - NF25 (21hpf) - ClutchA rd GSM1606308  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 25  
WE - NF25 (21hpf) - ClutchB GSM1606361  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 25  
WE - NF25 (22hpf) - ClutchA GSM1606219  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 25  
WE - NF25 (22hpf) - ClutchA rd GSM1606310  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 25  
WE - NF25 (22hpf) - ClutchB GSM1606363  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 25  
WE - NF26 (22.5hpf) - ClutchA GSM1606220  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 26  
WE - NF26 (22.5hpf) - ClutchA rd GSM1606311  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 26  
WE - NF26 (22.5hpf) - ClutchB GSM1606364  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 26  
WE - NF26 (23.5hpf) - ClutchA GSM1606222  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 26  
WE - NF26 (23.5hpf) - ClutchA rd GSM1606313  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 26  
WE - NF26 (23.5hpf) - ClutchB GSM1606366  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 26  
WE - NF26 (23hpf) - ClutchA GSM1606221  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 26  
WE - NF26 (23hpf) - ClutchA rd GSM1606312  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 26  
WE - NF26 (23hpf) - ClutchB GSM1606365  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 26  
WE - NF27 (24hpf) - ClutchA GSM1606223  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 27  
WE - NF27 (24hpf) - ClutchB GSM1606367  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 27  
WE - NF27 (25hpf) - ClutchA GSM1606224  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 27  
WE - NF27 (26hpf) - ClutchA GSM1606225  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 27  
WE - NF28 (27hpf) - ClutchA GSM1606226  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 28  
WE - NF28 (28hpf) - ClutchA GSM1606227  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 28  
WE - NF29/30 (29hpf) - ClutchA GSM1606228  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 29 and 30  
WE - NF3 (1.5hpf) - ClutchA GSM1606178  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 3 (4-cell)  
WE - NF3 (1.5hpf) - ClutchA rd GSM1606295  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 3 (4-cell)  
WE - NF3 (1.5hpf) - ClutchB GSM1606322  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 3 (4-cell)  
WE - NF31 (30hpf) - ClutchA GSM1606229  GSM1606267  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 31  
WE - NF32 (31hpf) - ClutchA GSM1606230  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 32  
WE - NF32 (32hpf) - ClutchA GSM1606231  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 32  
WE - NF33/34 (33hpf) - ClutchA GSM1606232  GSM1606268  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 33 and 34  
WE - NF33/34 (34hpf) - ClutchA GSM1606233  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 33 and 34  
WE - NF33/34 (35hpf) - ClutchA GSM1606234  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 33 and 34  
WE - NF35/36 (36hpf) - ClutchA GSM1606235  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 35 and 36  
WE - NF35/36 (37hpf) - ClutchA GSM1606236  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 35 and 36  
WE - NF37/38 (38hpf) - ClutchA GSM1606237  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 37 and 38  
WE - NF37/38 (39hpf) - ClutchA GSM1606238  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 37 and 38  
WE - NF37/38 (40hpf) - ClutchA GSM1606239  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 37 and 38  
WE - NF39 (41hpf) - ClutchA GSM1606240  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 39  
WE - NF39 (42hpf) - ClutchA GSM1606241  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 39  
WE - NF39 (44hpf) - ClutchA GSM1606242  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 39  
WE - NF39 (45hpf) - ClutchA GSM1606243  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 39  
WE - NF40 (46hpf) - ClutchA GSM1606244  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 40  
WE - NF40 (47hpf) - ClutchA GSM1606245  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 40  
WE - NF40 (48hpf) - ClutchA GSM1606246  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 40  
WE - NF40 (49hpf) - ClutchA GSM1606247  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 40  
WE - NF40 (50hpf) - ClutchA GSM1606248  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 40  
WE - NF41 (51hpf) - ClutchA GSM1606249  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 41  
WE - NF41 (52hpf) - ClutchA GSM1606250  GSM1606269  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 41  
WE - NF41 (53hpf) - ClutchA GSM1606251  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 41  
WE - NF41 (54hpf) - ClutchA GSM1606252  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 41  
WE - NF41 (55hpf) - ClutchA GSM1606253  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 41  
WE - NF42 (56hpf) - ClutchA GSM1606254  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 42  
WE - NF42 (57hpf) - ClutchA GSM1606255  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 42  
WE - NF42 (58hpf) - ClutchA GSM1606256  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 42  
WE - NF42 (59hpf) - ClutchA GSM1606257  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 42  
WE - NF42 (60hpf) - ClutchA GSM1606258  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 42  
WE - NF42 (61hpf) - ClutchA GSM1606259  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 42  
WE - NF42 (62hpf) - ClutchA GSM1606260  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 42  
WE - NF43 (63hpf) - ClutchA GSM1606261  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 43  
WE - NF43 (64hpf) - ClutchA GSM1606262  GSM1606270  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 43  
WE - NF43 (65hpf) - ClutchA GSM1606263  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 43  
WE - NF43 (66hpf) - ClutchA GSM1606264  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 43  
WE - NF5 (2hpf) - ClutchA GSM1606179  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 5 (16-cell)  
WE - NF5 (2hpf) - ClutchA rd GSM1606306  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 5 (16-cell)  
WE - NF5 (2hpf) - ClutchB GSM1606323  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 5 (16-cell)  
WE - NF6 (2.5hpf) - ClutchA GSM1606180  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 6 (32-cell)  
WE - NF6 (2.5hpf) - ClutchA rd GSM1606314  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 6 (32-cell)  
WE - NF6 (2.5hpf) - ClutchB GSM1606324  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 6 (32-cell)  
WE - NF7 (3.5hpf) - ClutchA GSM1606182  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 7  
WE - NF7 (3.5hpf) - ClutchA rd GSM1606316  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 7  
WE - NF7 (3.5hpf) - ClutchB GSM1606326  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 7  
WE - NF7 (3hpf) - ClutchA GSM1606181  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 7  
WE - NF7 (3hpf) - ClutchA rd GSM1606315  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 7  
WE - NF7 (3hpf) - ClutchB GSM1606325  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 7  
WE - NF8 (4hpf) - ClutchA GSM1606183  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 8  
WE - NF8 (4hpf) - ClutchA rd GSM1606317  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 8  
WE - NF8 (4hpf) - ClutchB GSM1606327  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 8  
WE - NF9 (4.5hpf) - ClutchA GSM1606184  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 9  
WE - NF9 (4.5hpf) - ClutchA rd GSM1606318  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 9  
WE - NF9 (4.5hpf) - ClutchB GSM1606328  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 9  
WE - NF9 (5.5hpf) - ClutchA GSM1606186  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 9  
WE - NF9 (5.5hpf) - ClutchA rd GSM1606274  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 9  
WE - NF9 (5.5hpf) - ClutchB GSM1606330  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 9  
WE - NF9 (5hpf) - ClutchA GSM1606185  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 9  
WE - NF9 (5hpf) - ClutchA rd GSM1606272  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 9  
WE - NF9 (5hpf) - ClutchB GSM1606329  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 9  
WE - NF9 (6hpf) - ClutchA GSM1606187  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 9  
WE - NF9 (6hpf) - ClutchA rd GSM1606275  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 9  
WE - NF9 (6hpf) - ClutchB GSM1606331  RNA-Seq
Background: Xtr.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 9  
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