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GEO Series: GSE73419

Title: Tissue gene expression of Xenopus laevis J strain [tissue]

Summary

Comprehensive RNA-seq experiments to measure the expression of homoeologs across different tissues, as a part of the Xenopus laevis genome project. This work is funded by Agency Japanese Ministry of Education, Culture, Sports, Science and Technology (MEXT; "Genome Science" Grant ID 221S0002).


Contributors: Taejoon Kwon, Shuji Takahashi, Yutaka Suzuki, Atsushi Toyoda, Naoto Ueno, Masanori Taira

Experiment Type: Collect mRNA from whole tissue; two female frogs were used as donors for most tissues (Taira dataset for one frog, Ueno dataset for the other frog); testis samples were collected from two male frogs (sibling of two female donors)

Article: Xenbase, PubMed

Source: NCBI GEO, Xenbase FTP

Samples: (DEG = Differentially Expressed Genes; GSM = GEO Sample Number)
Sample View GSMs Assay Type
brain - adult GSM1893239  GSM1893253  RNA-Seq
Background: Xla.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
brain adult frog stage  
eye - adult GSM1893240  GSM1893254  RNA-Seq
Background: Xla.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
eye adult frog stage  
heart - adult GSM1893241  GSM1893255  RNA-Seq
Background: Xla.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
heart adult frog stage  
intestine - adult GSM1893242  GSM1893256  RNA-Seq
Background: Xla.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
intestine adult frog stage  
kidney - adult GSM1893243  GSM1893257  RNA-Seq
Background: Xla.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
kidney adult frog stage  
liver - adult GSM1893244  GSM1893258  RNA-Seq
Background: Xla.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
liver adult frog stage  
lung - adult GSM1893245  GSM1893259  RNA-Seq
Background: Xla.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
lung adult frog stage  
muscle - adult GSM1893246  GSM1893260  RNA-Seq
Background: Xla.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
muscle adult frog stage  
ovary - adult GSM1893247  GSM1893261  RNA-Seq
Background: Xla.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
ovary adult frog stage  
pancreas - adult GSM1893248  GSM1893262  RNA-Seq
Background: Xla.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
pancreas adult frog stage  
skin - adult GSM1893249  GSM1893263  RNA-Seq
Background: Xla.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
skin adult frog stage  
spleen - adult GSM1893250  GSM1893264  RNA-Seq
Background: Xla.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
spleen adult frog stage  
stomach - adult GSM1893251  GSM1893265  RNA-Seq
Background: Xla.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
stomach adult frog stage  
testis - adult GSM1893252  GSM1893266  RNA-Seq
Background: Xla.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
testis adult frog stage  
Select All 
Xtr   
Xla 

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