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GEO Series: GSE73430

Title: Developmental gene expression of Xenopus laevis J strain [stage]

Summary

Comprehensive RNA-seq experiments to measure the expression of homoeologs across different developmental stages, as a part of the Xenopus laevis genome project. This work is funded by Agency Japanese Ministry of Education, Culture, Sports, Science and Technology (MEXT; "Genome Science" Grant ID 221S0002).


Contributors: Taejoon Kwon, Shuji Takahashi, Yutaka Suzuki, Atsushi Toyoda, Naoto Ueno, Masanori Taira

Experiment Type: Collect mRNA from whole embryos; two clutches were used (Taira dataset for one pair, Ueno dataset for the other pair)

Article: Xenbase, PubMed

Source: NCBI GEO, Xenbase FTP

Samples: (DEG = Differentially Expressed Genes; GSM = GEO Sample Number)
Sample View GSMs Assay Type
WE - NF10-10.5 GSM1893586  GSM1893600  GSM1893609  RNA-Seq
Background: Xla.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 10 to NF stage 10.5  
WE - NF12 GSM1893587  GSM1893601  RNA-Seq
Background: Xla.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 12  
WE - NF15 GSM1893588  GSM1893602  RNA-Seq
Background: Xla.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 15  
WE - NF20 GSM1893589  GSM1893603  RNA-Seq
Background: Xla.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 20  
WE - NF25 GSM1893590  GSM1893604  RNA-Seq
Background: Xla.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 25  
WE - NF29/30 GSM1893591  GSM1893605  RNA-Seq
Background: Xla.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 29 and 30  
WE - NF35/36 GSM1893592  GSM1893606  GSM1893610  RNA-Seq
Background: Xla.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 35 and 36  
WE - NF40 GSM1893593  GSM1893607  RNA-Seq
Background: Xla.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 40  
WE - NF8 GSM1893584  GSM1893598  GSM1893608  RNA-Seq
Background: Xla.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 8  
WE - NF9 GSM1893585  GSM1893599  RNA-Seq
Background: Xla.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
embryo NF stage 9  
egg - unfertilized egg GSM1893583  GSM1893594  RNA-Seq
Background: Xla.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
egg unfertilized egg stage  
oocyte - oocyte I-II GSM1893595  RNA-Seq
Background: Xla.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
oocyte oocyte stage I to oocyte stage II  
oocyte - oocyte III-IV GSM1893596  RNA-Seq
Background: Xla.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
oocyte oocyte stage III to oocyte stage IV  
oocyte - oocyte V-VI GSM1893597  RNA-Seq
Background: Xla.Outbred
Conditions:
Tissue Assay Stages ChIP Antibody
oocyte oocyte stage V to oocyte stage VI  
Select All 
Xtr   
Xla 

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