[2.6.1]
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BLAST Xenopus
Alignment Program
blastn - DNA query to DNA database
blastp - Protein query to protein database
blastx - Translated (6 frames) DNA query to protein database
tblastx - Translated (6 frames) DNA query to translated (6 frames) DNA database
tblastn - Protein query to DNA (6 frames) DNA database
Database
xenopus - nucleotide
tropicalis - nucleotide
laevis - nucleotide
xenopus - protein
tropicalis - protein
tropicalis - NCBI mRNA
laevis - NCBI mRNA
tropicalis - NCBI est
laevis - NCBI est
tropicalis - Gurdon EST clusters
laevis - Gurdon EST clusters
tropicalis - NCBI protein
laevis - NCBI protein
Xentr4.1 Filtered mRNA Models
Ensembl Tropicalis 4.1 mRNA Models
Xentr4.1 Filtered Protein Models
Ensembl Tropicalis 4.1 Protein Models
Query Sequence (FASTA format)
load query from file:
Options
E Value
0.1 (Default)
1000
500
100
10
1
0.001
1e-5
1e-25
1e-50
1e-100
Number of alignments to show
100
50
0
5
25
250
500
750
1000
Word size
Default
2
3
4
5
6
7
8
9
10
11
12
13
14
15
Default = 11 for blastn, 3 for all others.
Matrix
BLOSUM62 (Default)
BLOSUM45
BLOSUM80
PAM30
PAM70
Gapped alignment
True
False
Filtering
On
Off
[2.6.1]
[2.6.1]
