[2.2.1]
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BLAST Xenopus
Alignment Program
Select a program
blastn - DNA query to DNA database
blastp - Protein query to protein database
blastx - Translated (6 frames) DNA query to protein database
tblastx - Translated (6 frames) DNA query to translated (6 frames) DNA database
tblastn - Protein query to DNA (6 frames) DNA database
Database
Select a database
laevis - protein
laevis - mRNA
laevis - est
tropicalis - protein
tropicalis - mRNA
tropicalis - est
tropicalis - Gurdon EST clusters
laevis - Gurdon EST clusters
Query Sequence (FASTA format)
load query from file:
Options
E Value
0.1 (Default)
1000
500
100
10
1
0.001
1e-5
1e-25
1e-50
1e-100
Number of alignments to show
50 (Default)
0
5
25
100
250
500
750
1000
Word size
Default
2
3
4
5
6
7
8
9
10
11
12
13
14
15
Default = 11 for blastn, 3 for all others.
Matrix
BLOSUM62 (Default)
BLOSUM45
BLOSUM80
PAM30
PAM70
Gapped alignment
True
False
Filtering
On
Off
[2.2.1]
[2.2.1]
