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BLAST
Xenopus mRNA
Xenopus protein
X. laevis 9.2
(J-Strain)
X. laevis 9.1
(J-Strain)
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(J-Strain)
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Download Xenopus Genomes
X. laevis 9.2
(J-Strain) on JBrowse
X. laevis 9.2
(J-Strain) on UCSC
X. laevis 9.1
(J-Strain) on JBrowse
X. laevis 7.1
(J-Strain) on JBrowse
X. laevis 1.0
(outbred) on JBrowse
X. laevis 9.1
(J-Strain) on GBrowse
X. tropicalis 9.1
(Nigerian) on JBrowse
X. tropicalis 9.1
(Nigerian) on UCSC
X. tropicalis 9.0
(Nigerian) on JBrowse
X. tropicalis 8.0
(Nigerian) on JBrowse
X. tropicalis 7.1
(Nigerian) on JBrowse
X. tropicalis 9.0
(Nigerian) on GBrowse
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— BLAST —
Xenopus mRNA
Xenopus protein
X. laevis 9.2
X. laevis 9.1
X. laevis 7.1
Mitochondrial genomes
X. laevis 1.0
X. tropicalis 9.1
X. tropicalis 9.0
X. tropicalis 8.0
X. tropicalis 7.1
Other amphibian genomes
— Genomes —
 Download Xenopus Genomes
laevis 9.2 on JBrowse
laevis 9.2 on UCSC
laevis 9.1 on JBrowse
laevis 7.1 on JBrowse
laevis outbred 1.0 on JBrowse
laevis 9.1 on GBrowse
tropicalis 9.1 on JBrowse
tropicalis 9.1 on UCSC
tropicalis 9.0 on JBrowse
tropicalis 8.0 on JBrowse
tropicalis 7.1 on JBrowse
tropicalis 9.0 on GBrowse
Xenbase UCSC Track Hub
Veenstra Lab UCSC Track Hub
Japanese laevis
Other amphibians on JBrowse
— Expression —
Expression Search
Anatomy Search
miRNA Catalog
Expression Data @ GEO
RNAseq Data @ SRA
RNA-Seq Viewers
— Genes —
Gene Search
Gene Search Tips
Gene Naming Guidelines
Gene Name Questions
XenMine
— Anatomy & Development —
Organ Atlas
NF development stages
Images of Xenopus Embryos
Development Stage Temperature Charts
Movies of Xenopus Development
Cell Fate Maps
Xenopus Anatomy Ontology (XAO)
— Reagents & Protocols —
CRISPR & TALEN Support
Antibodies
Morpholinos
ORFeome
Small Molecules Wiki
Protocols Wiki
Search Clones
Clone Libraries
Vectors
Obtain Frogs
— Literature —
Papers
Textpresso
Books
Cite Xenbase
— Community —
Find People
Find a Lab
Organizations
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Xine (Xenopus Newsletter)
Meetings & Resources
Xenopus White Paper
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— Stock Center —
Lines
Transgenes
Clones
NXR
EXRC
NBRP
XLRRI
CRB
— Download
Download Xenbase Data
User-submitted Data
Browse Xenbase FTP
Legacy Gene Page Reports
Submit Your Data
BLAST Xenopus
Alignment program
blastn - DNA query to DNA database
blastp - Protein query to protein database
blastx - Translated (6 frames) DNA query to protein database
tblastx - Translated (6 frames) DNA query to translated (6 frames) DNA database
tblastn - Protein query to DNA (6 frames) DNA database
Database
-- Genomes --
Xenopus laevis J-strain 9.2 Genome
Xenopus laevis J-strain 9.1 Genome
Xenopus laevis J-strain 7.1 Genome
Xenopus laevis J-strain 6.0 Genome
Xenopus laevis outbred 1.0 Genome
Xenopus tropicalis 9.1 Genome
Xenopus tropicalis 9.0 Genome
Xenopus tropicalis 8.0 Genome
Xenopus tropicalis 7.1 Genome
Xenopus tropicalis 4.1 Genome
Millepora Genome
-- mRNA --
Xenopus laevis and tropicalis mRNA
Xenopus laevis and tropicalis mRNA plus EST Clusters
Xenopus laevis mRNA plus EST Clusters
Xenopus tropicalis mRNA plus EST Clusters
Xenopus laevis and tropicalis EST
-- Protein --
Xenopus laevis and tropicalis Protein
-->
Xenopus laevis Protein
Xenopus tropicalis protein
FASTA query sequence
>PREDICTED: pericentrin-like isoform X1 [Xenopus laevis] msleyssltlagyhemsdveegdhmnretfdihgedeteteneshqlqkqvvhtsindcndmtqlssnlqqelqgclqmledpaplsnpihtmegqlhdaakdkekqvaklenlmqekekkltflqekleiseksvfvlkqelsesnvevvklqhklsgfihpgtlqvekssvgmdkeqelastgedrfqfltsvitdlrqklehseslchdlskklrdqmleferervclehkhndivtnfklqlqhaeqhareaaahdkqekehlneelrtlkdklrlesesnqtlkmrhdqdvqfyitklqslereqelheklahsssvelekessdmsdkgskhalkgdyfrheledlkknlnrvkarkdndnyetalhhledhddgalsplsdtldcmdkylvpsasvesdsqehahfeldsdfvleqslsslteesvnllsspmaitnvlaggaslgtsldpeyfavylssnlrspapynefstmcdesllqkcavlveqlndkeqqlqecssaleealvkwsevtnelaaaklelniekskggdfkkheliveelqserdslrkkiialetksnvqdpnncgeklyhdseilknplltednltqllvekkilqsklsnveqelekalefcnelktdnaklnqmlqdvqksrecdhqeydnklnakgveqqllyqtikekeagfhererslqeevcvlkqvkaelenrsqaevehqnadfqksehhmqmealrlsltnmhtahlelcqtnlqrekedalvqlrehlndkrsqdvallqgrhqfeveklksqhaeamenlvvqhsqeletmqgeimqlkeaqsqeilhlqkqyekkmdglqeehsqeleewkekmenmhqqelasinetmlnemllqhqedmenlklqlqnerkhcdeltvqnqnevsilqseldqlreemrkllqdtdkekvqnsesdhekqlimqllqehpegeldistanrsniqipkqeggyyeirssvdiqllwsqldgsrasrqelielkeqllarsaqveeigrlkqdfeqqrlhikaehekemeelriyfeqksrmteenyreelemllqrlreikdedkeelphqsssllaldvaseneqshllqqltdellqhkeelsylrhqseeknkrdlenlhaslslqyvseiqslqmkhsleqeqlkarlseehlremtklgsntvcdnshlmgaevdenmqcfeddyqawhfplppnhyavkldnpleqsdvveqlvpeqgdklqcvlmenkdqicqaethlmpedatcsipntgnsengislqneschllyekrhdkellllkdqhakeleslkqqmsielaeitkniqadydcalkeaqkrfkqelrenpdelqslwrelhekldsekyqdgsgdhvsvspkgslgqhkellgnsmsdmqqhenmlivdvadqkyhlksefnadvlhhepkekiisqlleiqkqygdlrahvtelqlqngeelnktvseheqvlskpisvmkqkyeeelsnvvsqlqllhteespvselqmqneqelhrpvfelqhqedvnnqmselehkkelspliselqkqhdeefnnvfglqrqhqealnncvsklqqqheeeldghisdlqqqnekelsnrvsqllqqheeelnnkqmqheeldnhvselqdqnekelcnqvselqrkhekelknkkkqheeeldhrvyelqllhekelnnrvselqqqheeefnkrlselqqqleeklnnrvsdlqreheeelknkkmlneeqlehrlnelhllhekelnnrvselkqqheeelnnrvselqqhqeelnnrvsdlqreheeelknkqrqheeeldncmlelkqqhaeefnkhvselqqqheeelnnnvsklqrkhekelndkqrqheeefvnrvselqqqhekvlnnrvsklqqqhkeqlnncvskiqqqhkeelnnclseiqqqheeklkyqrsemqqqhelknglselqqqheeeltrvsnlqkheeelkaltfrhktqieqletthmtnmdtlessylteiqkirdehsqaladleiclsdrlqekeremleklanaemhwrdqhqqelrllreilgkelaavhmdkfqamsreleeahmeeldhqrcvleqekiqaldvlqeelqkieqqhqialqelqglhnvevkkmsleetgklqleirklkdeiqkqeiltteltterqalsaelqvkadqqlqfqeeiellkcqsemlleqqitqlkeefeverrvslqkkeeqftkeaekmqathqvemdhmtdklqeksklvlqlqeqissltkemeksdlqleelvqrrerenqegdnlvamlqsdvstaqhekaklhdscrrllklfsdvlkntlstedlickkiglcldsslphqenvdkndtlektwgtfallkcndllerndknrsdcetmteqslmssdegyevseylcesmlgnlevgleneekillmsqrlrtaveqllemvagsttqlefaqemqqkiqeklrsnnlemaqvvvqnqemkkqlalereaknqlqvelhkaqgliegyaaekatlektlsgkenaerllvveleksreqlkvlcqepsilgeekavllklqevlsgsvknveaellketerlaqekidlhcqakkdqsnllsqmkvlemefeeqmsrnqellrktndmsdlqqqiqslekqlknqrhfmdeqavereherdefqqeiqkleeqlklafknqgdsrayglldwriqienleaqvkekaddcnlllqgrdhleqqiterneeidkmliriqeleqaalsnadaakkctqleeelhklhktqkeilqdkdalqkqqynnalqisalqskldearhrvplagesenillkeqlqaereallikekeaeslaeqleqfredlmnkteevlqlnmqlevqskqnelvahefqeevfqlkedlfslkvqrdqerdnsslelpqallqeknqeidhlneqilqlqqelekltlqskssevdqleeslvehlrsdlerlrkdkeeeveqlhevieklqqelvqlgpnrhevsdsqesldqlglgevenlkselrkgarklhngslteldqlskgkedlrnleeelmmykteietlqqnleeiqaqhhaelevlgqnlhnlqestrqkvqelnslelqhtslqeehellrtvlsqresevailssqvqeiqdtlqenkafltekellvqtlqeqrtadvavleeqfaqkcfshelaiselqelrtnnealkelleksskdqekhreevdnlnphlntwedkakeiqaiksqeteknqvisvcesdqdlvslkeqlstakemlmgketqlhntqdllsrmkceleelhiecehretkaqqaiqqlkrrdacvvelqshsqnlgaqvqklqktlesqevtiasmseelqkqnmegrynvashirgytkprsftesltdlsdwdspdmvrkqeehihsmrvftpfselsiaystdcdpipsksseyqkqtlqydllgsstpsltgsnysaqrtspvgdtehimvesetedggtfrndnivheqtdkmfynegyetgrkpemmqgklaglgmgylrkrgmsknlqsmlqmiheesckilalsqrpidqipgdpmladtwqkdkqtlqdamqtlskalteaalkqekessdvaldwrkellqnvqrlleseraylrlelqsclgnhgsvdassmsetmerlikeqeeqkhlvmahllasdrssllseiqdlrsqlrmahlqnqeklqqlqetltnteekgsirehqlrrqaklleyklqqeasiladlkaslsrekeraseqrqlllveqgsvsqlrteqeewqleqekllktqtelqmeisrlreeleskeqtvsvymeklhtqqelgskrleeekilqqqsqeryektlqelsesleelqlqnnnlsaalqheqtccsnlkkdlqieqsraeallaleqnklsemkqelakerqqsqkvsntltlernmleqlkqqhsqelsrkdqekvqehnaaltlrsqlegersrakdlaammektqqqaihakrqleaevqasreetqkvretsiklramldslqsqkqqldntleqlrfresnlqkerdqyqaqlfiyqeeercwvkekekdrkreqqneakkaqeeerekkilslqqqhdrdqhriqelqhmlaeleeqeraiasrklqfqkesfsptkifsdidtiytkglekvwhqlsqmvlqvrewviknidrklpsypdeeavtslldtlselktdlkrscgkpsrqvshslmdvlqseneeltksvtalakdkmelksqlaelkrlqqpserqvrsssavepvfeaeraawhrerrhlqialkhaeselakvtlenqpvpdvpnsklhrlhrkylraesfrkalvyqkkylllllggfqaceqatlsliarmgvypspsdlqipvtekpaltkfrsavraviaisrlkflvrkwhkinkkavledpvvqtsaafkqgpltrtdilhqqnigsvllnspptkdvplclrpspvstsihspktthwthnrsgsspaltpeqpqstshdpersiseyirhlelvqqrlgglqngtspelsrnkyirk
load query from file:
Options
E value
0.1 (Default)
10
1
0.001
1e-5
1e-25
1e-50
1e-100
Number of alignments
25
1
5
50
100
Word size
Default
2
3
4
5
6
7
8
9
10
11
12
13
14
15
Default = 11 for blastn, 3 for all others.
Matrix
BLOSUM62 (Default)
BLOSUM45
BLOSUM80
PAM30
PAM70
Gapped alignment
True
False
Automatically set to False for sequences longer than 4500 bytes
Filtering
On
Off
BLAST time is limited to 30 seconds
Reporting Bugs
Contact Us
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About Xenbase
About
Xenopus
Xenbase: The
Xenopus
laevis and
X.
tropicalis resource.
Version:
4.8.2
© Xenbase 2005-2018
Major funding for Xenbase is provided by the
National Institute of Child Health and Human Development
, grant P41 HD064556