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BLAST
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Xenopus protein
X. laevis 9.2
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— BLAST —
Xenopus mRNA
Xenopus protein
X. laevis 9.2
X. laevis 9.1
Mitochondrial genomes
X. laevis 1.0
X. tropicalis 10.7
X. tropicalis 9.1
X. tropicalis 9.0
X. tropicalis 8.0
Other amphibian genomes
— Genomes —
Download Xenopus Genomes
laevis 9.2 on JBrowse
laevis 9.2 on UCSC
laevis 9.1 on JBrowse
laevis outbred 1.0 on JBrowse
laevis 9.1 on GBrowse
tropicalis 10.7 on JBrowse
tropicalis 9.1 on JBrowse
tropicalis 9.1 on UCSC
tropicalis 9.0 on JBrowse
tropicalis 9.0 on GBrowse
Xenbase UCSC Track Hub
Veenstra Lab UCSC Track Hub
Other amphibians on JBrowse
— Expression —
Expression Search
Anatomy Search
GEO Data @ Xenbase
RNA-Seq Visualization
miRNA Catalog
X. laevis Protein Expression
Expression Data @ GEO
RNAseq Data @ SRA
EctoMap
Tail Regen @ Cambridge
Embryogenesis via SPRING
— Genes —
Gene Search
Gene Search Tips
Gene Naming Guidelines
Gene Name Questions
— Anatomy & Development —
Anatomy Atlas
NF development stages
Images of Xenopus Embryos
Development Stage Temperature Charts
Movies of Xenopus Development
Cell Fate Maps
Search Diseases
Xenopus Anatomy Ontology (XAO)
— Reagents & Protocols —
CRISPR & TALEN Support
Antibodies
Morpholinos
ORFeome
Small Molecules Wiki
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— Literature —
Papers
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NXR
EXRC
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CRB
XLRRI
— Download
Download Xenbase Data
User-submitted Data
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BLAST Xenopus
BLAST databases on FTP
Alignment program
blastn - DNA query to DNA database
blastp - Protein query to protein database
blastx - Translated (6 frames) DNA query to protein database
tblastx - Translated (6 frames) DNA query to translated (6 frames) DNA database
tblastn - Protein query to DNA (6 frames) DNA database
Database
-- Genomes --
Xenopus laevis J-strain 9.2 Genome
Xenopus laevis J-strain 9.1 Genome
Xenopus laevis J-strain 7.1 Genome
Xenopus laevis J-strain 6.0 Genome
Xenopus laevis outbred 1.0 Genome
Xenopus tropicalis 10.7 Genome
Xenopus tropicalis 9.1 Genome
Xenopus tropicalis 9.0 Genome
Xenopus tropicalis 8.0 Genome
Xenopus tropicalis 7.1 Genome
Xenopus tropicalis 4.1 Genome
-- mRNA --
Xenopus laevis and tropicalis mRNA
Xenopus laevis and tropicalis mRNA plus EST Clusters
Xenopus laevis and tropicalis mRNA plus CDS
Xenopus laevis mRNA plus EST Clusters
Xenopus tropicalis mRNA plus EST Clusters
Xenopus laevis and tropicalis EST
-- Protein --
Xenopus laevis and tropicalis Protein
-->
Xenopus laevis Protein
Xenopus tropicalis protein
FASTA query sequence
>XP_004915456.1 PREDICTED: homeobox protein Hox-A2 [Xenopus tropicalis] MNYEFEREIGFINSQPSLAECLTSFPPVGDTFQSSSIKSSALSHSTLIPPPFEQTIPSLNPGSHPRHSRPKHSPNGHGDSPVPAGSLPPEYPWMKEKKASKKAPIAAATAAAAASAAPATTACLSHKEIIEIQDNSSGGSRRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKRQTQCKENQNGDGKFKHLDDSEKGEEEKEKSLFEQALNSVSGALLERDSYSFQQNALAQQQSHNSHNGDSQSFPVSPLSNSEKNLRHFQQQSPTAQNCLSTIAQDCAAGLNNDSPEALDVASLTDFNVFSSDSCLQLSDTVSPSLPGSLDSPVDISADSFDFFTDTFTTIDLQHLNY
Load query from file:
Options
E value
0.1 (Default)
10
1
0.001
1e-5
1e-25
1e-50
1e-100
Number of alignments
25
1
5
50
100
Word size
Default
2
3
4
5
6
7
8
9
10
11
12
13
14
15
Default = 11 for blastn, 3 for all others.
Matrix
BLOSUM62 (Default)
BLOSUM45
BLOSUM80
PAM30
PAM70
Gapped alignment
True
False
Automatically set to False for sequences longer than 4500 bytes
Filtering
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Off
BLAST time is limited to 30 seconds
Reporting Bugs
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About
Xenopus
Xenbase: The
Xenopus
laevis and
X.
tropicalis resource.
Version:
4.12.2
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Major funding for Xenbase is provided by grant P41 HD064556