Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Xenbase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Log-in
Register
Contact Us
Citing Xenbase
Search
Genes
Xenbase With Google
People
Labs
Organizations
Paper Authors
Paper Titles
Xenbase Accession
Clones
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
GEO Data Sets
Phenotypes
Genes
Xenbase With Google
People
Labs
Organizations
Paper Authors
Paper Titles
Xenbase Accession
Clones
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
GEO Data Sets
BLAST
Xenopus
mRNA
Xenopus
protein
X. laevis
9.2
(J-Strain)
X. tropicalis
10.0
(Nigerian)
X. tropicalis
9.1
(Nigerian)
Other amphibian genomes
Genomes
Download
Xenopus
Genomes
X. laevis
v9.2
(J-Strain) on JBrowse
X. laevis
v1.0
(wildtype) on JBrowse
X. tropicalis
v10.0
(Nigerian) on JBrowse
X. tropicalis
v9.1
(Nigerian) on JBrowse
Xenbase UCSC Track Hub
Other amphibian genomes
on JBrowse
Expression
Expression Search
Anatomy Search
GEO Data @ Xenbase
RNA-Seq Visualization
miRNA Catalog
X. laevis
Protein Expression
Genes
Gene Search
Gene Search Tips
Gene Nomenclature
Gene Nomenclature FAQ
Phenotypes
Phenotype Search
Mutants
Xenopus
Phenotype Ontology (XPO)
Disease Models
Anatomy & Development
Anatomy Atlas
NF development stages
Images of
Xenopus
Embryos
Development Stage Temperature Charts
Movies of
Xenopus
Development
Cell Fate Maps
Search Diseases
Xenopus
Anatomy Ontology (XAO)
Reagents & Protocols
CRISPR & TALEN Support
Antibodies
Morpholinos
Guide RNAs (gRNA)
ORFeome
Small Molecules Wiki
Protocols Wiki
Search Clones
Clone Libraries
Vectors
Obtain Frogs
Literature & Community
Search Papers
Find People
Find a Lab
Organizations
Job Postings
Xine (
Xenopus
Newsletter)
Meetings & Resources
Xenopus
White Paper
International
Xenopus
Board
Stock Center
Lines and Strains
Mutants
Transgenic Constructs
Clones
NXR
EXRC
NBRP
CRB
XLRRI
Download
Download Xenbase Data
User-submitted Data
Browse Xenbase FTP
Gene Page Reports
BLAST
BLAST databases on FTP
Alignment program
blastn - DNA query to DNA database
blastp - Protein query to protein database
blastx - Translated (6 frames) DNA query to protein database
tblastx - Translated (6 frames) DNA query to translated (6 frames) DNA database
tblastn - Protein query to DNA (6 frames) DNA database
Database
-- Genomes --
Xenopus laevis J-strain 9.2 Genome
Xenopus laevis J-strain 9.1 Genome
Xenopus laevis J-strain 7.1 Genome
Xenopus laevis J-strain 6.0 Genome
Xenopus laevis outbred 1.0 Genome
Xenopus tropicalis 10.0 Genome
Xenopus tropicalis 9.1 Genome
Xenopus tropicalis 9.0 Genome
Xenopus tropicalis 8.0 Genome
Xenopus tropicalis 7.1 Genome
Xenopus tropicalis 4.1 Genome
-- mRNA --
Xenopus laevis and tropicalis mRNA
Xenopus laevis and tropicalis mRNA plus EST Clusters
Xenopus laevis and tropicalis mRNA plus CDS
Xenopus laevis mRNA plus EST Clusters
Xenopus tropicalis mRNA plus EST Clusters
Xenopus laevis and tropicalis EST
-- Protein --
Xenopus laevis and tropicalis Protein
-->
Xenopus laevis Protein
Xenopus tropicalis protein
FASTA query sequence
>XP_004915456.1 PREDICTED: homeobox protein Hox-A2 [Xenopus tropicalis] MNYEFEREIGFINSQPSLAECLTSFPPVGDTFQSSSIKSSALSHSTLIPPPFEQTIPSLNPGSHPRHSRPKHSPNGHGDSPVPAGSLPPEYPWMKEKKASKKAPIAAATAAAAASAAPATTACLSHKEIIEIQDNSSGGSRRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKRQTQCKENQNGDGKFKHLDDSEKGEEEKEKSLFEQALNSVSGALLERDSYSFQQNALAQQQSHNSHNGDSQSFPVSPLSNSEKNLRHFQQQSPTAQNCLSTIAQDCAAGLNNDSPEALDVASLTDFNVFSSDSCLQLSDTVSPSLPGSLDSPVDISADSFDFFTDTFTTIDLQHLNY
Load query from file:
Options
E value
0.1 (Default)
10
1
0.001
1e-5
1e-25
1e-50
1e-100
Number of alignments
25
1
5
50
100
Word size
Default
2
3
4
5
6
7
8
9
10
11
12
13
14
15
Default = 11 for blastn, 3 for all others.
Matrix
BLOSUM62 (Default)
BLOSUM45
BLOSUM80
PAM30
PAM70
Gapped alignment
True
False
Automatically set to False for sequences longer than 4500 bytes
Filtering
On
Off
BLAST time is limited to 30 seconds
