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BLAST Xenopus
Alignment Program
blastn - DNA query to DNA database
blastp - Protein query to protein database
blastx - Translated (6 frames) DNA query to protein database
tblastx - Translated (6 frames) DNA query to translated (6 frames) DNA database
tblastn - Protein query to DNA (6 frames) DNA database
Database
xenopus - nucleotide
Xenopus laevis 6.0 Scaffolds
tropicalis - nucleotide
laevis - nucleotide
xenopus - protein
tropicalis - protein
tropicalis - NCBI mRNA
laevis - NCBI mRNA
tropicalis - NCBI est
laevis - NCBI est
tropicalis - Gurdon EST clusters
laevis - Gurdon EST clusters
tropicalis - NCBI protein
laevis - NCBI protein
Xentr4.1 Scaffolds
Xentr4.1 Filtered mRNA Models
Ensembl Tropicalis 4.1 mRNA Models
Xentr4.1 Filtered Protein Models
Ensembl Tropicalis 4.1 Protein Models
Xentr7.1 Scaffolds
Xentr7.1 Filtered mRNA Models
Xentr7.1 Filtered Protein Models
Query Sequence (FASTA format)
>Xenopus laevis actin, alpha 2, smooth muscle, aorta (acta2), mRNA cccacgcgtccgagcaaccccagcaaagcaccgagagggtttcttgttggaaaggctttagcaagtagcaatacaagatgtgtgacgaagaagacactactgcactggtgtgtgacaatggctctggactctgcaaggctggatttgctggggacgatgctccaagggccgtattcccctccatcgtgggtcgccccaggcaccagggtgtgatggttggtatgggtcagaaggacagctatgttggtgatgaagctcagagcaagagaggtattctgacactgaaatacccaattgaacacggcatcattacaaactgggatgacatggagaagatctggcaccacagcttctacaatgaattacgagtggccccagaggaacacccaaccctgctcactgaggctccactgaatcccaaagctaacagagaaaaaatgacccagataatgtttgagacatttaacgtgccagcaatgtacgttgctattcaggcggtgctatccctctatgcttctggccgtactactggtatcgtacttgactctggtgatggtgtcacccacaatgtaccaatctatgaagggtatgctcttcctcatgcaatcatgcgtcttgacctggctggccgtgacctaacagactacctcatgaagatcttgactgaacgcggctattcctttgtaactactgctgagcgtgaaattgtgcgagacatcaaggagaagctgtgctatgtagcccttgactttgagaatgaaatggctaccgctgcctcttcctcctctctggaaaagagttatgaacttcccgacggtcaggtcatcacaattggaaatgagcgtttccgctgccccgagaccctgttccagccatctttcattggtatggaatctgccggtatccatgaaaccacttacaacagcatcatgaaatgcgacatagacatccgaaaggacctgtatgccaacaacgtactgtccggtggtaccaccatgtaccctggcattgctgacagaatgcagaaggagatcactgctttggcccccagcacaatgaaaatcaagatcattgccccacctgagcgtaagtactccgtctggattggtggctccatcctcgcctccctgtctaccttccagcagatgtggatcagcaaacccgaatacgacgaagccggcccctccattgttcaccgcaaatgcttctaaaaaatgtccttttctttattttattattttttattccagcctataactgtgagtgtgctccaaaaaatgaagaaaaaaaaaaaaaaaa
load query from file:
Options
E Value
0.1 (Default)
1000
500
100
10
1
0.001
1e-5
1e-25
1e-50
1e-100
Number of alignments to show
25
1
5
50
100
250
500
750
1000
Word size
Default
2
3
4
5
6
7
8
9
10
11
12
13
14
15
Default = 11 for blastn, 3 for all others.
Matrix
BLOSUM62 (Default)
BLOSUM45
BLOSUM80
PAM30
PAM70
Gapped alignment
True
False
Filtering
On
Off
[2.8.5]
[2.8.5]
