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| Genomics: on-line resources |
last
update:
April 28, 2006
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| Full length gene collection | The NIH Xenopus Gene Collection (laevis and tropicalis) |
| Magpie | Sequence and motif analysis of tropicalis and laevis EST data |
| ESTs | Over 300,000 Xenopus ESTs are available. The EST pages provides you with the tools you need to utilize these sequences. |
| laevis gene index | XGI, a compilation of Xenopus gene and EST sequences |
| Tropicalis ESTs | The Sanger Centre tropicalis site- includes a trop BLAST service |
| NIBB XDB | Catalogue of NIBB/NIG Xenopus laevis EST project. XDB contains more than 70,000 high quality ESTs |
| Microarrays | The array project at Rockefeller |
| Homolgene | compares sequences between pairs of organisms to identify orthologues |
| BLAST | BLAST search page at NCBI |
| UniGene | find groups of orthologous genes in fish, mouse, rats and humans |
| Clustal | on-line clustalw sequence alignment via the EBI |
| VecScreen | removes contaminating vector sequences |
| e-PCR | check if your sequence contains a previously identified STS |
| Axeldb | database of Xenopus gene expression patterns |
| RNA folding | on-line RNA folding form by M. Zuker |
| Sequence alerting System | automatically searches your sequence against multiple database daily, searching for new matches and orthologues |
| ORF finder | as the name implies, finds ORFs in your sequence. Simply cut and paste your sequence in. |
| Primer tools | On-line primer design and Tm calculations |
| Molecular Biology Protocols and Bioinformatics | A portal for molecular biology which contains immunology methods and protocols, bioinformatics, and news categorized by DNA, RNA, protein, and proteomics. Also discuss and ask questions about molecular research techniques in the forum. |
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| community | gene expression | genomics | genetics | atlas/movies/fate | cell biology |
| literature | methods | events | magazine | search |