Gene expression
patterns: by gene name
In situ hybridization
or immunohistochemical detection of RNA and protein distribution patterns in
section and wholemount
Jump to genes
beginning with (X beginnings ignored): A. B,
C, D, E, F,
G, H, I, J,
K, L, M, N,
O, P, Q, R,
S, T, U, V,
W, XYZ
A
B
| BMP-2 |
somite, pineal gland, base of cement gland, part of heart, fin, others |
|
| BMP-4 |
early in ventro-lateral mesoderm, later in various parts of head including
otic, anterior cresent of the eye, base of the cement gland, others. |
|
| BMP-7 |
|
|
| Xbra
(brachyury) |
mesoderm |
MBT
to stage 10 |
| Xbra
(brachyury) |
mesoderm
blastoporal mesoderm and presumptive notochord |
after
stage 10 |
| brevican |
notochord,
rhombomeres 5 and 6 |
neurula
onwards |
C
| cardiac
actin |
somite
and heart |
13 onwards |
| cardiac
troponin I |
heart |
28
to adult |
| XCG |
cement gland |
|
| chordin |
dorsal lip, dorsal mesoderm, neural plate |
|
| XClC-k |
distal
segment of pronephric tubules and pronephric duct |
31 onwards |
| Collagen
type XVIII |
pronephric kidney, cranial ganglia, branchial arches, heart and otic vesicle |
|
| |
|
|
| cpl-1 |
dorsal brain, mostly dorsal forebrain |
|
| crescent |
organizer
early, pronephros tailbud onwards |
|
| cyclin
D1 |
anterior CNS, eye, crest |
|
D
| Darmin |
endoerm |
10 onwards |
| Darmin-r |
eye
lens and kidney glomus |
|
| X-Delta-2 |
prospective somite boundries, somitomeres |
|
| Dystroglycan |
notochord early, pronephros, branchal arches, otic vesicle and midbrain
late |
|
E
| eFGF |
|
|
| etr-1 |
CNS, including eyes, epiphysis, nasal pits and cranial ganglia and nerves |
|
| ets-1 |
neural
crest, cranial ganlia, endothelial cells, later in aortic arches and intersomitic
vessels |
|
| ets-2 |
pronephric tubules and pronephric duct |
|
| |
|
|
F
| Xl-fli |
early in pronephros and branchial arches, later in developing vasculature
and endocardium of the heart |
|
| Xfrizzled-8 |
early in organizer, later in heart, pronephros
and stomatodeal-hypophyseal anlagen. |
|
| |
|
|
G
| GATA-4 |
precardiac
mesoderm, myocardium, endocardium, great vessles |
|
| GATA-5 |
precardiac
mesoderm, myocardium, endocardium, great vessles |
|
| GATA-6 |
precardiac
mesoderm, myocardium, endocardium, great vessles |
|
| geminin |
neural,
sensory placodes |
|
| goosecoid
|
head mesoderm |
|
| gremlin |
pronephric duct, neural crest, crest derivatives |
|
H
| HNF1
beta / LFB3 |
pronephros
and endoderm |
|
| HoxB9 |
|
|
| HoxD1 |
posterior
neurectoderm |
|
I
J
K
L
| xlHbox6/ |
posterior
spinal chord |
|
| Xlim-1 |
some
neurons, pronephros |
|
M
| Mad |
crest |
|
| XMHC-alpha |
heart
|
|
| Mix |
early
mesoderm and endoderm |
|
| MLC |
heart |
|
| XMyf-5 |
dorsolateral
marginal zone, somite |
|
| XMyoD |
lateral marginal zone, somite |
|
N
| xNkx-2.5 |
presumptive heart and head endoderm |
12+ |
| XNBC1 |
sodium
bicarbonate cotransporter -1, late distal segment of pronephros (high) and
proximal segment (low) |
29+/33+ |
| XNBC2 |
sodium
bicarbonate cotransporter -2- early proximal segment of pronephros |
26+ |
| XNKCC2 |
Na-
K- Cl cotransporter. Early distal segment of pronephros |
28+ |
| N-myc |
Anterior
CNS and crest. Low levels in somites and pronephros |
|
| noggin |
dorsal marginal zone, dorsal lip, prechordal plate, notochord |
|
| Xnot |
organizer and presumptive notochord |
|
| N-myc |
Anterior CNS and crest. Low levels in somites and pronephros |
|
| Xnr3 |
superficial
layer of organizer |
|
O
P
| |
|
|
| Xp63 |
neural
crest (except hyoid), sensorial epidermis, tail fin |
|
| PA26 |
notochord |
|
| Xpat |
germ plasm and primordial germ cells |
|
| XPtc1
(patched) |
Neural
tube, somites, otic vesicle, optic vesicle, faint throughout brain, pituitary
anlage, hypochord |
|
| XPax-2 |
mid-hindbrain
junction, pronephros, rectal diverticulum, pharyngeal aches, otic vesicle,
spinal chord |
|
| XPax-8 |
presumptive
pronephros, presumptive otic vesicle |
|
| Xpitx3 |
pituitary
anlage, the lens placodes and head mesenchyme |
|
| progammed
cell death (PCD) |
widespread |
|
| plaktoglobin |
desmosomal-cadherin cell junctions |
|
Q
R
S
| Six |
somites,
cranial ganglia, otic placodes, stomache mesenchyme, pronephros and the
eyes. |
neurula+ |
| Six2 |
somites,
cranial ganglia, otic placodes, stomache mesenchyme, pronephros and the
eyes. |
neurula+ |
| Six3 |
|
|
| shh |
prospective
thyroid, Rathke's pouch, notochord, floor plate, brain (ventral only), infundibulum,
hypochord |
gastrula+ |
| Slug |
pre- and post-migratory cranial and trunk crest |
|
| sonic
hedgehog |
prospective
thyroid, Rathke's pouch, notochord, floor plate, brain (ventral only), infundibulum,
hypochord |
gastrula+ |
XSMP-30
(senescence marker protein -30) |
proximal
pronephric tubule specific |
32+ |
| sybII |
CNS |
|
T
| XTbx20 |
prominent
expression in heart throughout development, as well as in the hindbrain,
cement gland, and around cloacal aperture |
|
| TCF1 |
neural
plate, specific areas of the brain, eyes, otic vesicle, branchial arches
and head mesenchyme, somites, tailbud, pronephros and pronephric duct. |
|
| XTin1 |
presumptive
heart and head endoderm |
|
| xTwist |
neural crest and lateral plate |
|
U
V
W
| |
|
|
| xWT-1
(Wilms') |
pronephric splanchnic mesoderm, later restricetd to glomus |
18+ |
| Xwnt4 |
floor plate and part of pronephros |
|
| xwnt8 |
ventero/lateral
mesoderm. Also see xwnt8 double stain with xnr3 |
|
| xwnt11 |
|
|
X, Y, Z
XZnSLC30
SLC30A1
zinc transporter |
dorsal tips of pronephric tubules, early proximal
tubule |
28+ |
| |
|
|
