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XB-ART-45885
Mol Biol Evol January 1, 2013; 30 (1): 62-5.
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Basal vertebrates clarify the evolutionary history of ciliopathy-associated genes Tmem138 and Tmem216.

Venkatesh B , Ravi V , Lee AP , Warren WC , Brenner S .


Abstract
Recently, Lee et al. (Lee JH, Silhavy JL, Lee JE, et al. (30 co-authors). 2012. Evolutionarily assembled cis-regulatory module at a human ciliopathy locus. Science (335:966-969.) demonstrated that mutation in either of the transmembrane protein encoding genes, TMEM138 or TMEM216, causes phenotypically indistinguishable ciliopathy. Furthermore, on the basis of the observation that their orthologs are linked in a head-to-tail configuration in other mammals and Anolis, but present on different scaffolds or chromosomes in Xenopus tropicalis and zebrafish, the authors concluded that the two genes were joined by chromosomal rearrangement at the evolutionary amphibian-to-reptile transition to form a functional module. We have sequenced these gene loci in a cartilaginous fish, the elephant shark, and found that the two genes together with a related gene (Tmem80) constitute a tandem cluster. This suggests that the two genes were already linked in the vertebrate ancestor and then rearranged independently in Xenopus and zebrafish. Analyses of the coelacanth and lamprey genomes support this hypothesis. Our study highlights the importance of basal vertebrates as critical reference genomes.

PubMed ID: 22936720
PMC ID: PMC3657383
Article link: Mol Biol Evol


Species referenced: Xenopus tropicalis
Genes referenced: hjv tbx2 tmem138 tmem216

References [+] :
Amores, Genome evolution and meiotic maps by massively parallel DNA sequencing: spotted gar, an outgroup for the teleost genome duplication. 2011, Pubmed