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Mol Genet Genomics. September 1, 2013; 288 (9): 401-12.

The RRM1 domain of the poly(A)-binding protein from Saccharomyces cerevisiae is critical to control of mRNA deadenylation.

Zhang C , Lee DJ , Chiang YC , Richardson R , Park S , Wang X , Laue TM , Denis CL .

The poly(A)-binding protein PAB1 from the yeast Saccharomyces cerevisiae plays an important role in controlling mRNA deadenylation rates. Deletion of either its RRM1 or proline-rich domain (P domain) severely restricts deadenylation and slows mRNA degradation. Because these large deletions could be having unknown effects on the structure of PAB1, different strategies were used to determine the importance of the RRM1 and P domains to deadenylation. Since the P domain is quite variable in size and sequence among eukaryotes, P domains from two human PABPCs and from Xenopus were substituted for that of PAB1. The resultant PAB1 hybrid proteins, however, displayed limited or no difference in mRNA deadenylation as compared with PAB1. In contrast to the P domain, the RRM1 domain is highly conserved across species, and a systematic mutagenesis of the RRM1 domain was undertaken to identify its functional regions. Several mutations along the RNA-binding surface of RRM1 inhibited deadenylation, whereas one set of mutations on its exterior non-RNA binding surface shifted deadenylation from a slow distributive process to a rapid processive deadenylation. These results suggest that the RRM1 domain is the more critical region of PAB1 for controlling deadenylation and consists of at least two distinguishable functional regions.

PubMed ID: 23793387
PMC ID: PMC3769428
Article link: Mol Genet Genomics.
Grant support: GM78087 NIGMS NIH HHS , GM82048 NIGMS NIH HHS , R15 GM078078 NIGMS NIH HHS , R15 GM087684 NIGMS NIH HHS , F31 GM082048 NIGMS NIH HHS , R15 GM106286 NIGMS NIH HHS

Genes referenced: pabpc1 rrm1

External Resources:

Cao, 2001, Pubmed[+]

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