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XB-ART-52705
Data Brief 2016 Oct 14;9:699-703. doi: 10.1016/j.dib.2016.09.054.
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Data on microRNAs and microRNA-targeted mRNAs in Xenopus ectoderm.

Shah VV , Soibam B , Ritter RA , Benham A , Oomen J , Sater AK .


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Small RNAs from early neural (i.e., Noggin-expressing, or NOG) and epidermal (expressing a constitutively active BMP4 receptor, CABR) ectoderm in Xenopus laevis were sequenced to identify microRNAs (miRs) expressed in each tissue. Argonaute-associated mRNAs were isolated and sequenced to identify genes that are regulated by microRNAs in these tissues. Interactions between these ectodermal miRs and selected miR-regulated mRNAs were predicted using the PITA algorithm; PITA predictions for over 600 mRNAs are presented. All sequencing data are available at NCBI (NCBI Bioproject Accession number: PRJNA325834). This article accompanies the manuscript "MicroRNAs and ectodermal specification I. Identification of miRs and miR-targeted mRNAs in early anterior neural and epidermal ectoderm" (V.V. Shah, B. Soibam, R.A. Ritter, A. Benham, J. Oomen, A.K. Sater, 2016) [1].

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Species referenced: Xenopus laevis
Genes referenced: bmp4 nog

References [+] :
Anders, Differential expression analysis for sequence count data. 2010, Pubmed