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Navigating the simple search interface for Xenopus GEO datasets on Xenbase.
GEO Data Advanced Search
Navigating the advanced search interface for Xenopus GEO datasets on Xenbase.
Navigating a GSE Page
Navigating a GSE page for Xenopus GEO datasets on Xenbase.
2. JBrowse tutorials:
Introduction to JBrowse
Selecting/deselecting tracks and categories, switching species and genome versions, and searching for a particular gene in the genome.
JBrowse tutorial 1
Using the JBrowse FeatureSequence plugin to highlight, copy, or hide parts of a gene sequence according to their type
(UTR, intron, CDS), as well as view the upstream or downstream sequence for the gene.
JBrowse tutorial 2
Saving data from a track on JBrowse for a particular region of interest in the genome.
JBrowse tutorial 3
How to add a local/custom track from your PC to the JBrowse browser at Xenbase.
JBrowse tutorial 4
Exploring Xenbase GEO tracks with the faceted track selector in JBrowse.
FlyBase JBrowse tutorial
Introduction to JBrowse at FlyBase: selecting/deselecting tracks, gene search...etc.
3. Xenbase tutorials:
How to use Xenbase version 3.x
Kevin A. Burns
Introduction to features on Xenbase 3.x, how to search, and features you may be missing out on.