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Tutorial Videos




1. GEO GSE tutorials:

Title Movie Author Content
GEO Data Simple Search Mardi Nenni Navigating the simple search interface for Xenopus GEO datasets on Xenbase.
GEO Data Advanced Search Mardi Nenni Navigating the advanced search interface for Xenopus GEO datasets on Xenbase.
Navigating a GSE Page Mardi Nenni Navigating a GSE page for Xenopus GEO datasets on Xenbase.



2. JBrowse tutorials:

Title Movie Author Content
Introduction to JBrowse Vaneet Lotay Selecting/deselecting tracks and categories, switching species and genome versions, and searching for a particular gene in the genome.
JBrowse tutorial 1 Vaneet Lotay Using the JBrowse FeatureSequence plugin to highlight, copy, or hide parts of a gene sequence according to their type (UTR, intron, CDS), as well as view the upstream or downstream sequence for the gene.
JBrowse tutorial 2 Vaneet Lotay Saving data from a track on JBrowse for a particular region of interest in the genome.
JBrowse tutorial 3 Vaneet Lotay How to add a local/custom track from your PC to the JBrowse browser at Xenbase.
JBrowse tutorial 4 Vaneet Lotay Exploring Xenbase GEO tracks with the faceted track selector in JBrowse.
FlyBase JBrowse tutorial FlyBase Introduction to JBrowse at FlyBase: selecting/deselecting tracks, gene search...etc.



3. Xenbase tutorials:

Title Movie Author Content
How to use Xenbase version 3.x Kevin A. Burns Introduction to features on Xenbase 3.x, how to search, and features you may be missing out on.
How to use Xenbase version 2.x - Vidoe 1 Kevin A. Burns An overview of the useful features in Xenbase
How to use Xenbase version 2.x - Video 2 Kevin A. Burns The five most useful pages in Xenbase.
How to Use Xenbase version 2.x - Video 3. Kevin A. Burns Advanced Expression and Literature Searches.
Xenbase: The Xenopus laevis and X. tropicalis resource.
Version: 4.12.0


Major funding for Xenbase is provided by grant P41 HD064556