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XB-MORPHOLINO-17249666
Morpholino Name:
h3f3a MO3
Synonyms: H3.3
mRNA Target: h3-3a
Morpholino Type: uncategorized morpholino
Sequence:
5' GGTCTGCTTTGTACGGGCCATTTCC 3'
Source: Gene Tools LLC
Synonyms: H3.3
mRNA Target: h3-3a
Morpholino Type: uncategorized morpholino
Sequence:
5' GGTCTGCTTTGTACGGGCCATTTCC 3'

Source: Gene Tools LLC
mRNA Target | tropicalis | laevis.L | laevis.S | ||
Identities | 23/25 | ||||
genomic MO |
5' GGAAATGGCCCGTACCAAGCAGACA 3' ||||||||||||||| |||||||| 3' CCTTTACCGGGCATGTTTCGTCTGG 5' | ||||
Genomic Alignments ![]() |
Position | Identity | Strand | Target | mRNA |
laevis 9.2 | chr5S:12220620..12220644 | 25/25 | Antisense | off-target | h3-5.S |
chr5L:17227401..17227425 | 23/25 | Antisense | off-target | h3-5.L | |
Scaffold22:2309626..2309650 | 21/25 | Antisense | off-target | Xelaev18001465m | |
Scaffold22:2309626..2309650 | 21/25 | Sense | off-target | XB5900552.L [provisional] | |
Scaffold22:2309626..2309650 | 21/25 | Antisense | off-target | LOC108703802 | |
chr9_10L:97410752..97410776 | 21/25 | Antisense | off-target | LOC108701569 [provisional:h3-3b] | |
chr9_10S:64374837..64374861 | 21/25 | Sense | off-target | itprid2.S | |
chr9_10S:87367471..87367495 | 21/25 | Antisense | off-target | h3c13.S | |
Scaffold107314:148..172 | 21/25 | unknown | |||
Scaffold17831:30..54 | 21/25 | unknown | |||
Scaffold22:1875907..1875931 | 21/25 | unknown | |||
tropicalis 10.0 | Chr5:8209996..8210020 | 23/25 | Antisense | target | h3-3a |
Chr9:2965517..2965541 | 22/25 | Antisense | off-target | LOC100486653 | |
Chr9:2989985..2990009 | 22/25 | Antisense | off-target | LOC100486653 | |
Chr9:2989985..2990009 | 22/25 | Sense | off-target | LOC100493706 | |
Chr9:3506190..3506214 | 22/25 | Sense | off-target | LOC105945443 | |
Chr9:3506190..3506214 | 22/25 | Antisense | off-target | LOC101730986 | |
Chr9:3506190..3506214 | 22/25 | Sense | off-target | h2ac14 | |
Chr10:44806669..44806693 | 21/25 | Antisense | off-target | h3-3b | |
Chr3:135234032..135234056 | 21/25 | Antisense | off-target | h3c14 | |
Chr3:135383980..135384004 | 21/25 | Sense | off-target | LOC100493093 | |
Chr3:135383980..135384004 | 21/25 | Antisense | off-target | LOC108646287 | |
Chr3:135396651..135396675 | 21/25 | Antisense | off-target | LOC116409810 | |
Chr3:135488061..135488085 | 21/25 | Sense | off-target | LOC101734776 | |
Chr3:135612777..135612801 | 21/25 | Antisense | off-target | LOC116409812 | |
Chr3:135618393..135618417 | 21/25 | Antisense | off-target | LOC116409811 | |
Chr3:135653766..135653790 | 21/25 | Antisense | off-target | LOC100495338 | |
Chr3:135661764..135661788 | 21/25 | Antisense | off-target | LOC100493041 | |
Chr3:135763486..135763510 | 21/25 | Antisense | off-target | LOC100495788 | |
Chr6:4059550..4059574 | 21/25 | Sense | off-target | LOC101734931 | |
Chr6:4059550..4059574 | 21/25 | Antisense | off-target | LOC101732029 | |
Chr6:4245940..4245964 | 21/25 | Antisense | off-target | LOC100487139 | |
Chr6:4252505..4252529 | 21/25 | Antisense | off-target | LOC100496027 | |
Chr6:4308188..4308212 | 21/25 | Antisense | off-target | LOC100486720 | |
Chr6:4852645..4852669 | 21/25 | Antisense | off-target | LOC116411630 | |
Chr6:4852645..4852669 | 21/25 | Sense | off-target | LOC101733242 | |
Chr6:5109905..5109929 | 21/25 | Antisense | off-target | LOC100497127 | |
Chr6:5269748..5269772 | 21/25 | Antisense | off-target | LOC116411629 | |
Chr6:5288981..5289005 | 21/25 | Antisense | off-target | LOC100493100 | |
Chr9:2677794..2677818 | 21/25 | Antisense | off-target | LOC101731074 | |
Chr3:135488061..135488085 | 21/25 | Antisense | off-target | LOC108646286 | |
Chr3:135506145..135506169 | 21/25 | Antisense | off-target | LOC100496129 | |
Chr9:2833101..2833125 | 21/25 | Sense | off-target | LOC101731959 | |
Chr9:2833101..2833125 | 21/25 | Antisense | off-target | LOC108648869 | |
Chr9:2891951..2891975 | 21/25 | Antisense | off-target | LOC100493036 | |
Chr9:2954383..2954407 | 21/25 | Sense | off-target | LOC116407589 | |
Chr9:2954383..2954407 | 21/25 | Antisense | off-target | LOC100494884 | |
Chr9:4257125..4257149 | 21/25 | Antisense | off-target | LOC116406473 | |
Chr9:4565865..4565889 | 21/25 | Antisense | off-target | LOC100485665 | |
Chr9:4578575..4578599 | 21/25 | Antisense | off-target | LOC105947137 | |
Chr9:2727438..2727462 | 21/25 | Antisense | off-target | LOC100488698 | |
Chr9:2727438..2727462 | 21/25 | Antisense | off-target | h3c13 | |
Chr9:4807104..4807128 | 21/25 | Sense | off-target | LOC100487628 | |
Chr9:4807104..4807128 | 21/25 | Antisense | off-target | LOC101733224 | |
Chr9:4894196..4894220 | 21/25 | Sense | off-target | h2aj | |
Chr9:4894196..4894220 | 21/25 | Antisense | off-target | LOC101730415 | |
Chr9:4910107..4910131 | 21/25 | Antisense | off-target | LOC116407578 | |
Chr9:4974892..4974916 | 21/25 | Sense | off-target | LOC100497614 | |
Chr9:4974892..4974916 | 21/25 | Antisense | off-target | LOC116407579 | |
Chr9:4988963..4988987 | 21/25 | Sense | off-target | LOC100497614 | |
Chr9:5024642..5024666 | 21/25 | Antisense | off-target | LOC101730642 | |
Chr9:5558098..5558122 | 21/25 | Antisense | off-target | LOC100497406 | |
Chr9:5608824..5608848 | 21/25 | Sense | off-target | LOC116407737 | |
Chr9:5608824..5608848 | 21/25 | Antisense | off-target | LOC116407634 | |
Chr9:5615682..5615706 | 21/25 | Antisense | off-target | LOC116407634 | |
Chr9:4747342..4747366 | 21/25 | Antisense | off-target | LOC100487628 | |
Chr9:4747342..4747366 | 21/25 | Antisense | off-target | LOC116406469 | |
Chr9:4803197..4803221 | 21/25 | Sense | off-target | LOC100487628 | |
Chr9:4803197..4803221 | 21/25 | Antisense | off-target | LOC108645245 | |
Chr3:135252764..135252788 | 21/25 | unknown | |||
Chr9:2819323..2819347 | 21/25 | unknown | |||
Chr9:4262075..4262099 | 21/25 | unknown | |||
Chr9:2809832..2809856 | 21/25 | unknown | |||
Chr9:5010741..5010765 | 21/25 | unknown | |||
Publications | |||||
First: |
A developmental requirement for HIRA-dependent H3.3 deposition revealed at gastrulation in Xenopus., Cell Rep 2012 ![]() |
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Most recent: |
Histone variant H3.3 residue S31 is essential for Xenopus gastrulation regardless of the deposition pathway., Nat Commun 2020 ![]() |
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View All Papers |