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XB-MORPHOLINO-17311309

Morpholino Name: cbx1 MO1
Synonyms: TEgg130i17, XtHP1b
mRNA Target: cbx1

Morpholino Type:
Sequence:
5' TTTCTTGTTCTGCTTCTTTCCCATG 3'

Source: Gene Tools LLC


mRNA Target tropicalis laevis.L laevis.S
Identities 25/25 25/25
genomic

MO
5' CATGGGAAAGAAGCAGAACAAGAAA 3' ||||||||||||||||||||||||| 3' GTACCCTTTCTTCGTCTTGTTCTTT 5' 5' CATGGGAAAGAAGCAGAACAAGAAA 3' ||||||||||||||||||||||||| 3' GTACCCTTTCTTCGTCTTGTTCTTT 5'
Genomic Alignments Position Identity Strand Target mRNA
laevis 7.1 Scaffold13265:1833049-1833073 25/25 Antisense target cbx1.S
Scaffold75417:4587274-4587298 25/25 Antisense off-target Xelaev16071962m
Scaffold71264:1498487-1498511 22/25 unknown
Scaffold110275:177681-177705 21/25 unknown
Scaffold12518:4523573-4523597 21/25 Antisense off-target Xelaev16007112m
Scaffold137507:2833647-2833671 21/25 unknown
Scaffold25196:455854-455878 21/25 unknown
Scaffold259992:2020-2044 21/25 unknown
Scaffold271293:35071-35095 21/25 Antisense off-target Xelaev16036958m
Scaffold32212:7195813-7195837 21/25 unknown
Scaffold326837:99277-99301 21/25 Sense off-target Xelaev16043473m
Scaffold337349:216303-216327 21/25 unknown
Scaffold373158:430319-430343 21/25 unknown
Scaffold395611:37925-37949 21/25 unknown
Scaffold52573:8545786-8545810 21/25 unknown
Scaffold66475:2231274-2231298 21/25 unknown
tropicalis 7.1 scaffold_10:29251705-29251729 25/25 Antisense target cbx1
scaffold_1:177521265-177521289 21/25 unknown
scaffold_2:12634737-12634761 21/25 Antisense off-target luzp1
scaffold_2:70618526-70618550 21/25 unknown
scaffold_34:473167-473191 21/25 unknown
scaffold_34:521842-521866 21/25 unknown
scaffold_34:592118-592142 21/25 unknown
scaffold_5:64475002-64475026 21/25 unknown
scaffold_6:32894848-32894872 21/25 Antisense off-target ca8
scaffold_6:62668570-62668594 21/25 unknown
scaffold_7:26607510-26607534 21/25 unknown
scaffold_8:100822720-100822744 21/25 unknown
Publications
First: Defining synphenotype groups in Xenopus tropicalis by use of antisense morpholino oligonucleotides. [PLoS Genet 2006]
Most recent:
View All Papers



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