Papers associated with trunk region (and tbxt)

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	Mechanical Tensions Regulate Gene Expression in the Xenopus laevis Axial Tissues., Eroshkin FM., Int J Mol Sci. January 10, 2024; 25 (2):
	Gene expression in notochord and nuclei pulposi: a study of gene families across the chordate phylum., Raghavan R., BMC Ecol Evol. October 27, 2023; 23 (1): 63.
	The complete dorsal structure is formed from only the blastocoel roof of Xenopus blastula: insight into the gastrulation movement evolutionarily conserved among chordates., Sato Y., Dev Genes Evol. June 1, 2023; 233 (1): 1-12.
	Xbp1 and Brachyury establish an evolutionarily conserved subcircuit of the notochord gene regulatory network., Wu Y., Elife. January 20, 2022; 11
	Rab7 is required for mesoderm patterning and gastrulation in Xenopus., Kreis J., Biol Open. July 15, 2021; 10 (7):
	Combinatorial transcription factor activities on open chromatin induce embryonic heterogeneity in vertebrates., Bright AR., EMBO J. May 3, 2021; 40 (9): e104913.
	Evolution of Somite Compartmentalization: A View From Xenopus., Della Gaspera B., Front Cell Dev Biol. January 1, 2021; 9 790847.
	Chromatin accessibility and histone acetylation in the regulation of competence in early development., Esmaeili M., Dev Biol. June 1, 2020; 462 (1): 20-35.
	Modeling Bainbridge-Ropers Syndrome in Xenopus laevis Embryos., Lichtig H., Front Physiol. January 1, 2020; 11 75.
	Maternal pluripotency factors initiate extensive chromatin remodelling to predefine first response to inductive signals., Gentsch GE., Nat Commun. September 19, 2019; 10 (1): 4269.
	RARγ is required for mesodermal gene expression prior to gastrulation in Xenopus., Janesick A., Development. September 17, 2018; 145 (18):
	Ketamine Modulates Zic5 Expression via the Notch Signaling Pathway in Neural Crest Induction., Shi Y, Shi Y., Front Mol Neurosci. February 7, 2018; 11 9.
	Cells from subcutaneous tissues contribute to scarless skin regeneration in Xenopus laevis froglets., Otsuka-Yamaguchi R., Dev Dyn. August 1, 2017; 246 (8): 585-597.
	Identification of new regulators of embryonic patterning and morphogenesis in Xenopus gastrulae by RNA sequencing., Popov IK., Dev Biol. June 15, 2017; 426 (2): 429-441.
	Specification of anteroposterior axis by combinatorial signaling during Xenopus development., Carron C., Wiley Interdiscip Rev Dev Biol. January 1, 2016; 5 (2): 150-68.
	Mesodermal origin of median fin mesenchyme and tail muscle in amphibian larvae., Taniguchi Y., Sci Rep. June 18, 2015; 5 11428.
	A time space translation hypothesis for vertebrate axial patterning., Durston AJ., Semin Cell Dev Biol. June 1, 2015; 42 86-93.
	Notum is required for neural and head induction via Wnt deacylation, oxidation, and inactivation., Zhang X., Dev Cell. March 23, 2015; 32 (6): 719-30.
	The serpin PN1 is a feedback regulator of FGF signaling in germ layer and primary axis formation., Acosta H., Development. March 15, 2015; 142 (6): 1146-58.
	Development of the vertebrate tailbud., Beck CW., Wiley Interdiscip Rev Dev Biol. January 1, 2015; 4 (1): 33-44.
	NEDD4L regulates convergent extension movements in Xenopus embryos via Disheveled-mediated non-canonical Wnt signaling., Zhang Y., Dev Biol. August 1, 2014; 392 (1): 15-25.
	Occupancy of tissue-specific cis-regulatory modules by Otx2 and TLE/Groucho for embryonic head specification., Yasuoka Y., Nat Commun. July 9, 2014; 5 4322.
	Stochastic specification of primordial germ cells from mesoderm precursors in axolotl embryos., Chatfield J., Development. June 1, 2014; 141 (12): 2429-40.
	An essential role for LPA signalling in telencephalon development., Geach TJ., Development. February 1, 2014; 141 (4): 940-9.
	FoxA4 favours notochord formation by inhibiting contiguous mesodermal fates and restricts anterior neural development in Xenopus embryos., Murgan S., PLoS One. January 1, 2014; 9 (10): e110559.
	The Xenopus homologue of Down syndrome critical region protein 6 drives dorsoanterior gene expression and embryonic axis formation by antagonising polycomb group proteins., Li HY., Development. December 1, 2013; 140 (24): 4903-13.
	Dhrs3 protein attenuates retinoic acid signaling and is required for early embryonic patterning., Kam RK., J Biol Chem. November 1, 2013; 288 (44): 31477-87.
	In vivo T-box transcription factor profiling reveals joint regulation of embryonic neuromesodermal bipotency., Gentsch GE., Cell Rep. September 26, 2013; 4 (6): 1185-96.
	An intact brachyury function is necessary to prevent spurious axial development in Xenopus laevis., Aguirre CE., PLoS One. January 1, 2013; 8 (1): e54777.
	Suv4-20h histone methyltransferases promote neuroectodermal differentiation by silencing the pluripotency-associated Oct-25 gene., Nicetto D., PLoS Genet. January 1, 2013; 9 (1): e1003188.
	Transcriptional regulation of mesoderm genes by MEF2D during early Xenopus development., Kolpakova A., PLoS One. January 1, 2013; 8 (7): e69693.
	Variation in the schedules of somite and neural development in frogs., Sáenz-Ponce N., Proc Natl Acad Sci U S A. December 11, 2012; 109 (50): 20503-7.
	Conservation and evolutionary divergence in the activity of receptor-regulated smads., Sorrentino GM., Evodevo. October 1, 2012; 3 (1): 22.
	Gastrulation and pre-gastrulation morphogenesis, inductions, and gene expression: similarities and dissimilarities between urodelean and anuran embryos., Kaneda T., Dev Biol. September 1, 2012; 369 (1): 1-18.
	Regulation of early xenopus embryogenesis by Smad ubiquitination regulatory factor 2., Das S., Dev Dyn. August 1, 2012; 241 (8): 1260-73.
	The cytoplasmic tyrosine kinase Arg regulates gastrulation via control of actin organization., Bonacci G., Dev Biol. April 1, 2012; 364 (1): 42-55.
	Histology of plastic embedded amphibian embryos and larvae., Kurth T., Genesis. March 1, 2012; 50 (3): 235-50.
	Genomic targets of Brachyury (T) in differentiating mouse embryonic stem cells., Evans AL., PLoS One. January 1, 2012; 7 (3): e33346.
	Mef2d acts upstream of muscle identity genes and couples lateral myogenesis to dermomyotome formation in Xenopus laevis., Della Gaspera B., PLoS One. January 1, 2012; 7 (12): e52359.
	Siamois and Twin are redundant and essential in formation of the Spemann organizer., Bae S., Dev Biol. April 15, 2011; 352 (2): 367-81.
	XMeis3 is necessary for mesodermal Hox gene expression and function., In der Rieden PM., PLoS One. March 9, 2011; 6 (3): e18010.
	Fgf is required to regulate anterior-posterior patterning in the Xenopus lateral plate mesoderm., Deimling SJ., Mech Dev. January 1, 2011; 128 (7-10): 327-41.
	The RNA-binding protein Xp54nrb isolated from a Ca²+-dependent screen is expressed in neural structures during Xenopus laevis development., Neant I., Int J Dev Biol. January 1, 2011; 55 (10-12): 923-31.
	Xclaudin 1 is required for the proper gastrulation in Xenopus laevis., Chang DJ., Biochem Biophys Res Commun. June 18, 2010; 397 (1): 75-81.
	B1 SOX coordinate cell specification with patterning and morphogenesis in the early zebrafish embryo., Okuda Y., PLoS Genet. May 6, 2010; 6 (5): e1000936.
	Delta-Notch signaling is involved in the segregation of the three germ layers in Xenopus laevis., Revinski DR., Dev Biol. March 15, 2010; 339 (2): 477-92.
	Zygotic VegT is required for Xenopus paraxial mesoderm formation and is regulated by Nodal signaling and Eomesodermin., Fukuda M., Int J Dev Biol. January 1, 2010; 54 (1): 81-92.
	The RNA-binding protein Seb4/RBM24 is a direct target of MyoD and is required for myogenesis during Xenopus early development., Li HY., Mech Dev. January 1, 2010; 127 (5-6): 281-91.
	Downstream of FGF during mesoderm formation in Xenopus: the roles of Elk-1 and Egr-1., Nentwich O., Dev Biol. December 15, 2009; 336 (2): 313-26.
	Imaging morphogenesis, in Xenopus with Quantum Dot nanocrystals., Stylianou P., Mech Dev. October 1, 2009; 126 (10): 828-41.

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