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Xenopus Sox11 Partner Proteins and Functional Domains in Neurogenesis. , Singleton KS, Silva-Rodriguez P, Cunningham DD , Silva EM ., Genes (Basel). February 15, 2024; 15 (2):
The sulfotransferase XB5850668.L is required to apportion embryonic ectodermal domains. , Marchak A, Neilson KM , Majumdar HD, Yamauchi K, Klein SL, Moody SA ., Dev Dyn. December 1, 2023; 252 (12): 1407-1427.
Regenerative Potential of Injured Spinal Cord in the Light of Epigenetic Regulation and Modulation. , Gupta S, Dutta S, Hui SP., Cells. June 22, 2023; 12 (13):
Zmym4 is required for early cranial gene expression and craniofacial cartilage formation. , Jourdeuil K, Neilson KM , Cousin H , Tavares ALP, Majumdar HD, Alfandari D , Alfandari D , Moody SA ., Front Cell Dev Biol. January 1, 2023; 11 1274788.
Quantitative analysis of transcriptome dynamics provides novel insights into developmental state transitions. , Johnson K, Freedman S, Braun R, LaBonne C ., BMC Genomics. October 23, 2022; 23 (1): 723.
Influence of Sox protein SUMOylation on neural development and regeneration. , Chang KC., Neural Regen Res. March 1, 2022; 17 (3): 477-481.
Developmental and Injury-induced Changes in DNA Methylation in Regenerative versus Non-regenerative Regions of the Vertebrate Central Nervous System. , Reverdatto S, Prasad A, Belrose JL, Zhang X, Sammons MA, Gibbs KM , Szaro BG ., BMC Genomics. January 4, 2022; 23 (1): 2.
Combinatorial transcription factor activities on open chromatin induce embryonic heterogeneity in vertebrates. , Bright AR, van Genesen S, Li Q , Grasso A, Frölich S, van der Sande M, van Heeringen SJ, Veenstra GJC ., EMBO J. May 3, 2021; 40 (9): e104913.
Mcrs1 interacts with Six1 to influence early craniofacial and otic development. , Neilson KM , Keer S, Bousquet N, Macrorie O, Majumdar HD, Kenyon KL , Alfandari D , Alfandari D , Moody SA ., Dev Biol. November 1, 2020; 467 (1-2): 39-50.
Comparative gene expression profiling between optic nerve and spinal cord injury in Xenopus laevis reveals a core set of genes inherent in successful regeneration of vertebrate central nervous system axons. , Belrose JL, Prasad A, Sammons MA, Gibbs KM , Szaro BG ., BMC Genomics. August 5, 2020; 21 (1): 540.
Natural size variation among embryos leads to the corresponding scaling in gene expression. , Leibovich A, Edri T, Klein SL, Moody SA , Fainsod A ., Dev Biol. June 15, 2020; 462 (2): 165-179.
Six1 proteins with human branchio-oto-renal mutations differentially affect cranial gene expression and otic development. , Shah AM, Krohn P, Baxi AB, Tavares ALP, Sullivan CH, Chillakuru YR, Majumdar HD, Neilson KM , Moody SA ., Dis Model Mech. March 3, 2020; 13 (3):
miR-199 plays both positive and negative regulatory roles in Xenopus eye development. , Ritter RA, Ulrich CH , Brzezinska BN, Shah VV , Zamora MJ, Kelly LE, El-Hodiri HM , Sater AK ., Genesis. March 1, 2020; 58 (3-4): e23354.
De Novo SOX4 Variants Cause a Neurodevelopmental Disease Associated with Mild Dysmorphism. , Zawerton A, Yao B, Yeager JP, Pippucci T, Haseeb A, Smith JD, Wischmann L, Kühl SJ , Dean JCS, Pilz DT, Holder SE, Deciphering Developmental Disorders Study, University of Washington Center for Mendelian Genomics, McNeill A, Graziano C, Lefebvre V., Am J Hum Genet. February 7, 2019; 104 (2): 246-259.
Six1 and Irx1 have reciprocal interactions during cranial placode and otic vesicle formation. , Sullivan CH, Majumdar HD, Neilson KM , Moody SA ., Dev Biol. February 1, 2019; 446 (1): 68-79.
A transition from SoxB1 to SoxE transcription factors is essential for progression from pluripotent blastula cells to neural crest cells. , Buitrago-Delgado E, Schock EN , Nordin K, LaBonne C ., Dev Biol. December 15, 2018; 444 (2): 50-61.
The neural border: Induction, specification and maturation of the territory that generates neural crest cells. , Pla P, Monsoro-Burq AH ., Dev Biol. December 1, 2018; 444 Suppl 1 S36-S46.
Identification of retinal homeobox ( rax) gene-dependent genes by a microarray approach: The DNA endoglycosylase neil3 is a major downstream component of the rax genetic pathway. , Pan Y, Kelly LE, El-Hodiri HM ., Dev Dyn. November 1, 2018; 247 (11): 1199-1210.
Histone deacetylase activity has an essential role in establishing and maintaining the vertebrate neural crest. , Rao A, LaBonne C ., Development. August 8, 2018; 145 (15):
FGF mediated MAPK and PI3K/Akt Signals make distinct contributions to pluripotency and the establishment of Neural Crest. , Geary L, LaBonne C ., Elife. January 19, 2018; 7
Wbp2nl has a developmental role in establishing neural and non-neural ectodermal fates. , Marchak A, Grant PA , Neilson KM , Datta Majumdar H, Yaklichkin S , Johnson D, Moody SA ., Dev Biol. September 1, 2017; 429 (1): 213-224.
Foxd4 is essential for establishing neural cell fate and for neuronal differentiation. , Sherman JH, Karpinski BA, Fralish MS, Cappuzzo JM, Dhindsa DS, Thal AG, Moody SA , LaMantia AS, Maynard TM., Genesis. June 1, 2017; 55 (6):
The Sox transcriptional factors: Functions during intestinal development in vertebrates. , Fu L, Shi YB ., Semin Cell Dev Biol. March 1, 2017; 63 58-67.
Pa2G4 is a novel Six1 co-factor that is required for neural crest and otic development. , Neilson KM , Abbruzzesse G , Kenyon K , Bartolo V, Krohn P, Alfandari D , Alfandari D , Moody SA ., Dev Biol. January 15, 2017; 421 (2): 171-182.
Neural transcription factors bias cleavage stage blastomeres to give rise to neural ectoderm. , Gaur S, Mandelbaum M, Herold M, Majumdar HD, Neilson KM , Maynard TM, Mood K, Daar IO , Moody SA ., Genesis. June 1, 2016; 54 (6): 334-49.
Deletions and de novo mutations of SOX11 are associated with a neurodevelopmental disorder with features of Coffin-Siris syndrome. , Hempel A, Pagnamenta AT, Blyth M, Mansour S, McConnell V, Kou I, Ikegawa S, Tsurusaki Y, Matsumoto N, Lo-Castro A, Plessis G, Albrecht B, Battaglia A, Taylor JC, Howard MF, Keays D, Sohal AS, [Organization not found], Kühl SJ , Kühl SJ , Kini U, McNeill A., J Med Genet. March 1, 2016; 53 (3): 152-62.
Early neural ectodermal genes are activated by Siamois and Twin during blastula stages. , Klein SL, Moody SA ., Genesis. May 1, 2015; 53 (5): 308-20.
Evolutionarily conserved role for SoxC genes in neural crest specification and neuronal differentiation. , Uy BR, Simoes-Costa M, Koo DE, Sauka-Spengler T , Bronner ME ., Dev Biol. January 15, 2015; 397 (2): 282-92.
Neural transcription factors: from embryos to neural stem cells. , Lee HK , Lee HS , Moody SA ., Mol Cells. October 31, 2014; 37 (10): 705-12.
Left- right patterning in Xenopus conjoined twin embryos requires serotonin signaling and gap junctions. , Vandenberg LN, Blackiston DJ , Rea AC, Dore TM, Levin M ., Int J Dev Biol. January 1, 2014; 58 (10-12): 799-809.
sox4 and sox11 function during Xenopus laevis eye development. , Cizelsky W, Hempel A, Metzig M, Tao S, Hollemann T , Kühl M , Kühl SJ ., PLoS One. July 1, 2013; 8 (7): e69372.
On becoming neural: what the embryo can tell us about differentiating neural stem cells. , Moody SA , Klein SL, Karpinski BA, Maynard TM, Lamantia AS., Am J Stem Cells. June 30, 2013; 2 (2): 74-94.
Suv4-20h histone methyltransferases promote neuroectodermal differentiation by silencing the pluripotency-associated Oct-25 gene. , Nicetto D, Hahn M, Jung J, Schneider TD, Straub T, David R , Schotta G, Rupp RA ., PLoS Genet. January 1, 2013; 9 (1): e1003188.
WT1 and Sox11 regulate synergistically the promoter of the Wnt4 gene that encodes a critical signal for nephrogenesis. , Murugan S, Shan J, Kühl SJ , Tata A, Pietilä I, Kühl M , Vainio SJ., Exp Cell Res. June 10, 2012; 318 (10): 1134-45.
Specific domains of FoxD4/5 activate and repress neural transcription factor genes to control the progression of immature neural ectoderm to differentiating neural plate. , Neilson KM , Klein SL, Mhaske P, Mood K, Daar IO , Moody SA ., Dev Biol. May 15, 2012; 365 (2): 363-75.
Differential distribution of competence for panplacodal and neural crest induction to non-neural and neural ectoderm. , Pieper M, Ahrens K , Rink E, Peter A, Schlosser G ., Development. March 1, 2012; 139 (6): 1175-87.
Geminin cooperates with Polycomb to restrain multi-lineage commitment in the early embryo. , Lim JW, Hummert P, Mills JC, Kroll KL ., Development. January 1, 2011; 138 (1): 33-44.
Yes-associated protein 65 ( YAP) expands neural progenitors and regulates Pax3 expression in the neural plate border zone. , Gee ST , Milgram SL, Kramer KL, Conlon FL , Moody SA ., PLoS One. January 1, 2011; 6 (6): e20309.
Mechanisms driving neural crest induction and migration in the zebrafish and Xenopus laevis. , Klymkowsky MW , Rossi CC, Artinger KB., Cell Adh Migr. January 1, 2010; 4 (4): 595-608.
Dazap2 is required for FGF-mediated posterior neural patterning, independent of Wnt and Cdx function. , Roche DD, Liu KJ , Harland RM , Monsoro-Burq AH ., Dev Biol. September 1, 2009; 333 (1): 26-36.
Notch signaling downstream of foxD5 promotes neural ectodermal transcription factors that inhibit neural differentiation. , Yan B , Neilson KM , Moody SA ., Dev Dyn. June 1, 2009; 238 (6): 1358-65.
foxD5 plays a critical upstream role in regulating neural ectodermal fate and the onset of neural differentiation. , Yan B , Neilson KM , Moody SA ., Dev Biol. May 1, 2009; 329 (1): 80-95.
Identification of novel transcripts with differential dorso- ventral expression in Xenopus gastrula using serial analysis of gene expression. , Faunes F, Sánchez N, Castellanos J, Vergara IA, Melo F, Larraín J ., Genome Biol. February 11, 2009; 10 (2): R15.
Maternal Interferon Regulatory Factor 6 is required for the differentiation of primary superficial epithelia in Danio and Xenopus embryos. , Sabel JL, d'Alençon C, O'Brien EK, Van Otterloo E, Lutz K, Cuykendall TN , Schutte BC, Houston DW , Cornell RA., Dev Biol. January 1, 2009; 325 (1): 249-62.
Xenopus Sox3 activates sox2 and geminin and indirectly represses Xvent2 expression to induce neural progenitor formation at the expense of non-neural ectodermal derivatives. , Rogers CD, Harafuji N, Archer T, Cunningham DD , Casey ES ., Mech Dev. January 1, 2009; 126 (1-2): 42-55.
Identification of novel ciliogenesis factors using a new in vivo model for mucociliary epithelial development. , Hayes JM, Kim SK, Abitua PB, Park TJ, Herrington ER, Kitayama A, Grow MW , Ueno N , Wallingford JB ., Dev Biol. December 1, 2007; 312 (1): 115-30.
Sox17 and Sox4 differentially regulate beta-catenin/T-cell factor activity and proliferation of colon carcinoma cells. , Sinner D, Kordich JJ, Spence JR, Opoka R, Rankin S , Rankin S , Lin SC, Jonatan D, Zorn AM , Wells JM ., Mol Cell Biol. November 1, 2007; 27 (22): 7802-15.
Grainyhead-like 3, a transcription factor identified in a microarray screen, promotes the specification of the superficial layer of the embryonic epidermis. , Chalmers AD , Lachani K, Shin Y , Sherwood V , Cho KW , Papalopulu N ., Mech Dev. September 1, 2006; 123 (9): 702-18.
SOX7 is an immediate-early target of VegT and regulates Nodal-related gene expression in Xenopus. , Zhang C, Basta T, Fawcett SR, Klymkowsky MW ., Dev Biol. February 15, 2005; 278 (2): 526-41.
Identification of neural genes using Xenopus DNA microarrays. , Shin Y , Kitayama A, Koide T, Peiffer DA, Mochii M , Liao A, Ueno N , Cho KW ., Dev Dyn. February 1, 2005; 232 (2): 432-44.