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Summary Expression Phenotypes Gene Literature (0) GO Terms (1) Nucleotides (147) Proteins (55) Interactants (4) Wiki
XB-GENEPAGE-1016435

Show:     All X. tropicalis X. laevis.L

Nucleotide sequences for ttc39b - All

RefSeq mRNAs(5)
Models - Gene (26)
Models - mRNA (35)
mRNAs (7)
ESTs (42)

RefSeq mRNAs (5)

Accession Version Protein Name Length Protein Species
NM_001016802 NM_001016802.2 tetratricopeptide repeat protein 39B 2234 bp NP_001016802 X. tropicalis
NM_001094701 NM_001094701.1 tetratricopeptide repeat protein 39B 2188 bp NP_001088170 X. laevis.L
XM_041581856 XM_041581856.1 XP_041437790.1 tetratricopeptide repeat protein 39B isoform X1 2630 bp XP_041437790 X. laevis.L
XM_041580111 XM_041580111.1 XP_041436045.1 tetratricopeptide repeat protein 39B-like isoform X2 2955 bp XP_041436045 X. laevis.S
XM_041580110 XM_041580110.1 XP_041436044.1 tetratricopeptide repeat protein 39B-like isoform X1 3398 bp XP_041436044 X. laevis.S

Models - Gene (26)

Source Version Model Species
NCBI 10.0 XBXT10g013682 X. tropicalis
NCBI 10.1 XBXL10_1g2025 X. laevis.L
NCBI 10.1 XBXL10_1g4787 X. laevis.S
ENSEMBL 10.0 ttc39b X. tropicalis
JGI 9.1 Xelaev18006797m.g X. laevis.L
JGI 9.1 Xelaev18010054m.g X. laevis.S
Xenbase 9.1 gene4370 X. tropicalis
Xenbase 9.2 gene5103 X. laevis.L
Xenbase 9.2 gene49600 X. laevis.S
ENSEMBL 9.1 ttc39b X. tropicalis
JGI 8.0 Xetrov14002803m.g X. tropicalis
JGI 7.1 Xetro.A01788 X. tropicalis
JGI 7.2 Xelaev16055563m.g X. laevis.L
JGI 6.0 XeXenL6RMv10023690m.g X. laevis.L
ENSEMBL 4.1 ENSXETG00000003301 X. tropicalis
JGI 4.1 fgenesh1_Sanger_cdna.C_scaffold_443000001 X. tropicalis
JGI 4.1 e_gw1.443.27.1 X. tropicalis
JGI 4.1 e_gw1.443.35.1 X. tropicalis
JGI 4.1 e_gw1.443.36.1 X. tropicalis
JGI 4.1 gw1.443.27.1 X. tropicalis
JGI 4.1 gw1.443.35.1 X. tropicalis
JGI 4.1 gw1.443.36.1 X. tropicalis
JGI 4.1 fgenesh1_kg.C_scaffold_443000002 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_443000003 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_443000004 X. tropicalis
JGI 4.1 fgenesh1_pm.C_scaffold_443000002 X. tropicalis

mRNAs based on gene models(35)

Source Version Model Species
NCBI 10.0 mRNA067677 X. tropicalis
NCBI 10.1 XBmRNA3624 X. laevis.L
NCBI 10.1 XBmRNA8914 X. laevis.S
ENSEMBL 10.0 ENSXETT00000104893 X. tropicalis
ENSEMBL 10.0 ENSXETT00000007165 X. tropicalis
ENSEMBL 10.0 ENSXETT00000066732 X. tropicalis
JGI 9.1 Xelaev18006797m X. laevis.L
JGI 9.1 Xelaev18010054m X. laevis.S
Xenbase 9.1 rna14229 X. tropicalis
Xenbase 9.2 rna14907 X. laevis.L
Xenbase 9.2 rna95653 X. laevis.S
ENSEMBL 9.1 ENSXETT00000007165 X. tropicalis
ENSEMBL 9.1 ENSXETT00000066732 X. tropicalis
ENSEMBL 9.1 ENSXETT00000104893 X. tropicalis
ENSEMBL 9.1 ENSXETT00000104792 X. tropicalis
ENSEMBL 9.1 ENSXETT00000102987 X. tropicalis
ENSEMBL 9.1 ENSXETT00000080402 X. tropicalis
ENSEMBL 9.1 ENSXETT00000077346 X. tropicalis
JGI 8.0 Xetrov14002803m X. tropicalis
JGI 7.1 Xetro.A01788.2 X. tropicalis
JGI 7.1 Xetro.A01788.1 X. tropicalis
JGI 7.2 Xelaev16055563m X. laevis.L
JGI 6.0 XeXenL6RMv10023690m X. laevis.L
JGI 4.1 fgenesh1_Sanger_cdna.C_scaffold_443000001 X. tropicalis
ENSEMBL 4.1 ENSXETT00000007165 X. tropicalis
JGI 4.1 e_gw1.443.27.1 X. tropicalis
JGI 4.1 e_gw1.443.35.1 X. tropicalis
JGI 4.1 e_gw1.443.36.1 X. tropicalis
JGI 4.1 gw1.443.27.1 X. tropicalis
JGI 4.1 gw1.443.35.1 X. tropicalis
JGI 4.1 gw1.443.36.1 X. tropicalis
JGI 4.1 fgenesh1_kg.C_scaffold_443000002 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_443000003 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_443000004 X. tropicalis
JGI 4.1 fgenesh1_pm.C_scaffold_443000002 X. tropicalis

mRNAs from cDNA libraries (7)

Clone Accession Species Library Anatomy Stage
NM_001016802 X. tropicalis
TEgg088o02 CR855604 X. tropicalis
IMAGE:6866518 BC084078 X. laevis.L NICHD_XGC_Emb1 whole organism NF stage 10
NM_001094701 X. laevis.L
XM_041581856 X. laevis.L
XM_041580111 X. laevis.S
XM_041580110 X. laevis.S

ESTs (42)

Clone Accession 5'/3' Species Library Anatomy Stage
IMAGE:7094281 CK662732 5' X. tropicalis XtSt10-30 whole organism NF stage 10 to NF stage 29 and 30
IMAGE:8884023 EL839748 5' X. tropicalis NICHD_XGC_trop_25 whole organism NF stage 25
IMAGE:7570436 CX454861 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7634870 CX338372 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7788835 CX334057 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:8928604 EL677090 5' X. tropicalis NICHD_XGC_tropThy1 thymus frog
IMAGE:8859246 EL823477 5' X. tropicalis NICHD_XGC_tropTe1 testis frog
IMAGE:7584914 CX416023 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7642312 CX797120 5' X. tropicalis NIH_XGC_tropBrn2 brain frog
IMAGE:7661496 CX843532 5' X. tropicalis NIH_XGC_tropBrn3 brain frog
IMAGE:7668126 CX855474 5' X. tropicalis NIH_XGC_tropBrn4 brain frog
IMAGE:7719701 CX982765 5' X. tropicalis NIH_XGC_tropInt1 intestine frog
TTpA007i07 BX708465 5' X. tropicalis XGC-tadpole whole organism NF stage 35 and 36 to NF stage 40
IMAGE:7634870 DR902000 3' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7668126 CX855473 3' X. tropicalis NIH_XGC_tropBrn4 brain frog
IMAGE:7570436 CX454860 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:8928604 EL677089 3' X. tropicalis NICHD_XGC_tropThy1 thymus frog
IMAGE:8859246 EL823478 3' X. tropicalis NICHD_XGC_tropTe1 testis frog
IMAGE:7788835 CX334056 3' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7584914 CX416022 3' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7642312 CX797119 3' X. tropicalis NIH_XGC_tropBrn2 brain frog
IMAGE:7661496 CX843531 3' X. tropicalis NIH_XGC_tropBrn3 brain frog
IMAGE:7719701 CX982764 3' X. tropicalis NIH_XGC_tropInt1 intestine frog
TTpA007i07 BX708466 3' X. tropicalis XGC-tadpole whole organism NF stage 35 and 36 to NF stage 40
IMAGE:8529436 EB463255 5' X. laevis.L NICHD_XGC_int_m whole organism NF stage 56 to NF stage 62
IMAGE:8536633 EB469944 5' X. laevis.L NICHD_XGC_olfb brain unspecified stage
IMAGE:8529411 EB470138 5' X. laevis.L NICHD_XGC_int_m whole organism NF stage 56 to NF stage 62
IMAGE:8536964 EB483911 5' X. laevis.L NICHD_XGC_olfb brain unspecified stage
IMAGE:8823648 EG580797 5' X. laevis.L NICHD_XGC_int_m whole organism NF stage 56 to NF stage 62
IMAGE:8820779 EG584023 5' X. laevis.L NICHD_XGC_int_m whole organism NF stage 56 to NF stage 62
xl296c06 DC121965 5' X. laevis.L Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
PBX0033F02 AW635432 5' X. laevis.L Blackshear/Soares normalized Xenopus egg library egg unfertilized egg stage
IMAGE:4678855 BI349845 5' X. laevis.L Blackshear/Soares normalized Xenopus egg library egg unfertilized egg stage
IMAGE:5157287 CA793503 5' X. laevis.L NICHD_XGC_Emb1 whole organism NF stage 10
IMAGE:6866518 CA988584 5' X. laevis.L NICHD_XGC_Emb1 whole organism NF stage 10
XL016h17 BJ032374 5' X. laevis.L NIBB Mochii normalized Xenopus neurula library whole organism NF stage 15
W013 CK816002 5' X. laevis.L Cornea-lens transdifferentiation library cornea NF stage 50 to NF stage 52
IMAGE:8531135 EB462954 5' X. laevis.L NICHD_XGC_int_m whole organism NF stage 56 to NF stage 62
IMAGE:8823648 EG576406 3' X. laevis.L NICHD_XGC_int_m whole organism NF stage 56 to NF stage 62
IMAGE:8820779 EG582145 3' X. laevis.L NICHD_XGC_int_m whole organism NF stage 56 to NF stage 62
rxl296c06 DC087145 3' X. laevis.L Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
XL016h17 BJ047407 3' X. laevis.L NIBB Mochii normalized Xenopus neurula library whole organism NF stage 15