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Summary Expression Phenotypes Gene Literature (2) GO Terms (25) Nucleotides (154) Proteins (59) Interactants (110) Wiki
XB-GENEPAGE-5854282

Show:     All X. tropicalis X. laevis

Nucleotide sequences for phgdh - All

RefSeq mRNAs(5)
Models - Gene (36)
Models - mRNA (43)
mRNAs (8)
ESTs (45)

RefSeq mRNAs (5)

Accession Version Protein Name Length Protein Species
NM_001015929 NM_001015929.2 D-3-phosphoglycerate dehydrogenase 1716 bp NP_001015929 X. tropicalis
NM_001097781 NM_001097781.1 phosphoglycerate dehydrogenase S homeolog 1725 bp NP_001091250 X. laevis.S
XM_018236745 XM_018236745.2 D-3-phosphoglycerate dehydrogenase isoform X1 2543 bp XP_018092234 X. laevis.L
XM_018236746 XM_018236746.2 D-3-phosphoglycerate dehydrogenase isoform X2 1772 bp XP_018092235 X. laevis.L
XM_041576517 XM_041576517.1 XP_041432451.1 D-3-phosphoglycerate dehydrogenase isoform X3 1579 bp XP_041432451 X. laevis.L

Models - Gene (36)

Source Version Model Species
NCBI 10.1 XBXL10_1g41609 X. laevis.L
NCBI 10.1 XBXL10_1g44131 X. laevis.S
NCBI 10.0 XBXT10g005939 X. tropicalis
ENSEMBL 10.0 phgdh X. tropicalis
Xenbase 9.2 gene13729 X. laevis.S
Xenbase 9.2 gene8694 X. laevis.L
JGI 9.1 Xelaev18045691m.g X. laevis.L
JGI 9.1 Xelaev18047894m.g X. laevis.S
Xenbase 9.1 gene623 X. tropicalis
ENSEMBL 9.1 phgdh X. tropicalis
JGI 8.0 Xetrov14039085m.g X. tropicalis
JGI 7.2 Xelaev16003904m.g X. laevis.S
JGI 7.1 Xetro.I01824 X. tropicalis
JGI 6.0 XeXenL6RMv10031793m.g X. laevis.S
JGI 6.0 XeXenL6RMv10017907m.g X. laevis.S
ENSEMBL 4.1 ENSXETG00000008530 X. tropicalis
JGI 4.1 estExt_fgenesh1_kg.C_6720001 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_672000010 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_672000011 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_672000012 X. tropicalis
JGI 4.1 fgenesh1_kg.C_scaffold_672000001 X. tropicalis
JGI 4.1 estExt_FilteredModels1.C_6720024 X. tropicalis
JGI 4.1 e_gw1.672.26.1 X. tropicalis
JGI 4.1 e_gw1.672.48.1 X. tropicalis
JGI 4.1 e_gw1.672.73.1 X. tropicalis
JGI 4.1 gw1.672.26.1 X. tropicalis
JGI 4.1 gw1.672.48.1 X. tropicalis
JGI 4.1 gw1.672.73.1 X. tropicalis
JGI 4.1 estExt_Genewise1.C_6720026 X. tropicalis
JGI 4.1 estExt_Genewise1.C_6720048 X. tropicalis
JGI 4.1 estExt_Genewise1.C_6720073 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_6720010 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_6720011 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_6720012 X. tropicalis
JGI 4.1 estExt_fgenesh1_pm.C_6720003 X. tropicalis
JGI 4.1 fgenesh1_Sanger_cdna.C_scaffold_672000001 X. tropicalis

mRNAs based on gene models(43)

Source Version Model Species
NCBI 10.1 XBmRNA83017 X. laevis.S
NCBI 10.1 XBmRNA78437 X. laevis.L
NCBI 10.0 mRNA029416 X. tropicalis
ENSEMBL 10.0 ENSXETT00000070030 X. tropicalis
ENSEMBL 10.0 ENSXETT00000018674 X. tropicalis
Xenbase 9.2 rna39932 X. laevis.S
Xenbase 9.2 rna25307 X. laevis.L
ENSEMBL 9.1 ENSXETT00000087827 X. tropicalis
ENSEMBL 9.1 ENSXETT00000018674 X. tropicalis
ENSEMBL 9.1 ENSXETT00000070030 X. tropicalis
ENSEMBL 9.1 ENSXETT00000071471 X. tropicalis
ENSEMBL 9.1 ENSXETT00000081255 X. tropicalis
ENSEMBL 9.1 ENSXETT00000102878 X. tropicalis
Xenbase 9.1 rna1936 X. tropicalis
JGI 9.1 Xelaev18047894m X. laevis.S
JGI 9.1 Xelaev18045691m X. laevis.L
JGI 8.0 Xetrov14039085m X. tropicalis
JGI 7.2 Xelaev16003904m X. laevis.S
JGI 7.1 Xetro.I01824.1 X. tropicalis
JGI 7.1 Xetro.I01824.2 X. tropicalis
JGI 6.0 XeXenL6RMv10017907m X. laevis.S
JGI 6.0 XeXenL6RMv10031793m X. laevis.S
JGI 4.1 fgenesh1_pg.C_scaffold_672000010 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_672000011 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_672000012 X. tropicalis
JGI 4.1 fgenesh1_Sanger_cdna.C_scaffold_672000001 X. tropicalis
JGI 4.1 gw1.672.26.1 X. tropicalis
JGI 4.1 gw1.672.48.1 X. tropicalis
JGI 4.1 gw1.672.73.1 X. tropicalis
JGI 4.1 estExt_fgenesh1_kg.C_6720001 X. tropicalis
JGI 4.1 e_gw1.672.73.1 X. tropicalis
JGI 4.1 e_gw1.672.26.1 X. tropicalis
ENSEMBL 4.1 ENSXETT00000018674 X. tropicalis
JGI 4.1 e_gw1.672.48.1 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_6720010 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_6720011 X. tropicalis
JGI 4.1 estExt_fgenesh1_pm.C_6720003 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_6720012 X. tropicalis
JGI 4.1 estExt_FilteredModels1.C_6720024 X. tropicalis
JGI 4.1 estExt_Genewise1.C_6720026 X. tropicalis
JGI 4.1 estExt_Genewise1.C_6720048 X. tropicalis
JGI 4.1 estExt_Genewise1.C_6720073 X. tropicalis
JGI 4.1 fgenesh1_kg.C_scaffold_672000001 X. tropicalis

mRNAs from cDNA libraries (8)

Clone Accession Species Library Anatomy Stage
IMAGE:7674259 BC118688 X. tropicalis NIH_XGC_tropBrn4 brain frog
TGas020c10 CR926379 X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
NM_001015929 X. tropicalis
IMAGE:6944779 BC130204 X. laevis.S
NM_001097781 X. laevis.S
XM_018236745 X. laevis.L
XM_018236746 X. laevis.L
XM_041576517 X. laevis.L

ESTs (45)

Clone Accession 5'/3' Species Library Anatomy Stage
IMAGE:7674259 CX884371 5' X. tropicalis NIH_XGC_tropBrn4 brain frog
IMAGE:7026854 CF785149 5' X. tropicalis XtSt10-30 whole organism NF stage 10 to NF stage 29 and 30
TTbA025h15 CR415812 5' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
TGas020c10 AL632836 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
THdA017h10 CR568548 5' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
st21a10 DC169110 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
st22a10 DC169393 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
IMAGE:7600673 CX345594 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
TGas135e06 AL964663 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
XZT1431 CX360635 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
XZT4198 CX400048 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7577727 CX423392 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:8927335 EL674902 5' X. tropicalis NICHD_XGC_tropThy1 thymus frog
IMAGE:7565272 CX481775 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7664085 CX848100 5' X. tropicalis NIH_XGC_tropBrn4 brain frog
IMAGE:8965271 EL659207 5' X. tropicalis NICHD_XGC_tropInt_66 intestine unspecified stage
IMAGE:7514826 CX745318 5' X. tropicalis NIH_XGC_tropGas6 whole organism NF stage 10 to NF stage 13
IMAGE:7514854 CX745517 5' X. tropicalis NIH_XGC_tropGas6 whole organism NF stage 10 to NF stage 13
xtbs21P13 CN082808 5' X. tropicalis Xenopus tropicalis xtbs plasmid library central nervous system NF stage 58 to NF stage 64
xtbs04K23 CN073815 5' X. tropicalis Xenopus tropicalis xtbs plasmid library central nervous system NF stage 58 to NF stage 64
IMAGE:7584254 CX414973 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
TNeu025i24 AL642409 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
IMAGE:7664085 CX848099 3' X. tropicalis NIH_XGC_tropBrn4 brain frog
TGas135e06 BX758695 3' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
rst21a10 DC138918 3' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
rst22a10 DC139222 3' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
IMAGE:7577727 CX423391 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7565272 CX481774 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7026854 CF785148 3' X. tropicalis XtSt10-30 whole organism NF stage 10 to NF stage 29 and 30
TTbA025h15 CR415813 3' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
THdA017h10 CR568549 3' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
IMAGE:7600673 CX345593 3' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
XZT1431 CX360634 3' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7674259 CX884370 3' X. tropicalis NIH_XGC_tropBrn4 brain frog
IMAGE:8927335 EL674901 3' X. tropicalis NICHD_XGC_tropThy1 thymus frog
IMAGE:6877663 CB206407 5' X. laevis.S NICHD_XGC_Tad1 whole organism NF stage 54 to prometamorphosis stage
IMAGE:7299926 CO384139 5' X. laevis.S Blumberg_Cho dorsal blastopore lip upper blastopore lip NF stage 7 to NF stage 9
IMAGE:8321430 DY576032 5' X. laevis.S NICHD_XGC_Emb10 whole organism NF stage 17 to NF stage 19
IMAGE:6879866 CB207461 5' X. laevis.S NICHD_XGC_Tad1 whole organism NF stage 54 to prometamorphosis stage
xl265a14 DC113264 5' X. laevis.S Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
XL445b11ex BP684144 5' X. laevis.S Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
IMAGE:3746648 BF427914 5' X. laevis.S Xenopus laevis oocyte non normalized oocyte NF stage 5 (16-cell) to NF stage 6 (32-cell)
IMAGE:6879866 CB562672 3' X. laevis.S NICHD_XGC_Tad1 whole organism NF stage 54 to prometamorphosis stage
XL445b11ex BP720118 3' X. laevis.S Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
rxl265a14 DC078433 3' X. laevis.S Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15